Hb_001545_220

Information

Type -
Description -
Location Contig1545: 279092-280997
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06170g
description POPTRDRAFT_347060; hypothetical protein
nr
ID XP_002300886.1
description hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
swissprot
ID Q9FIB0
description Cytochrome P450 78A7 OS=Arabidopsis thaliana GN=CYP78A7 PE=2 SV=1
trembl
ID B9GT45
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06170g PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 78a7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_220 0.0 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
2 Hb_007627_020 0.1477198752 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_030602_030 0.1477208228 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_005673_010 0.1477236048 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_068533_010 0.1477387255 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_004458_020 0.1477409031 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
7 Hb_005211_200 0.1477438984 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_007187_020 0.1477481143 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_000696_280 0.1477556313 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_005181_100 0.1477908449 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
11 Hb_000000_350 0.1478063631 - - -
12 Hb_000107_010 0.1478083727 - - -
13 Hb_037949_010 0.1478261952 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
14 Hb_000984_090 0.1478334788 - - -
15 Hb_002400_130 0.1478575266 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
16 Hb_005144_200 0.1478902453 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
17 Hb_113631_010 0.1479156108 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000029_250 0.1479447194 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000352_250 0.1479696391 - - -
20 Hb_013204_010 0.1479903853 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]

Gene co-expression network

sample Hb_001545_220 Hb_001545_220 Hb_007627_020 Hb_007627_020 Hb_001545_220--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_001545_220--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_001545_220--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_001545_220--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_001545_220--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_001545_220--Hb_005211_200 Hb_007627_020--Hb_030602_030 Hb_007627_020--Hb_005673_010 Hb_007627_020--Hb_068533_010 Hb_007627_020--Hb_004458_020 Hb_007627_020--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_007627_020--Hb_007187_020 Hb_030602_030--Hb_005673_010 Hb_030602_030--Hb_068533_010 Hb_030602_030--Hb_004458_020 Hb_030602_030--Hb_005211_200 Hb_030602_030--Hb_007187_020 Hb_005673_010--Hb_068533_010 Hb_005673_010--Hb_004458_020 Hb_005673_010--Hb_005211_200 Hb_005673_010--Hb_007187_020 Hb_068533_010--Hb_004458_020 Hb_068533_010--Hb_005211_200 Hb_068533_010--Hb_007187_020 Hb_000696_280 Hb_000696_280 Hb_068533_010--Hb_000696_280 Hb_004458_020--Hb_005211_200 Hb_004458_020--Hb_007187_020 Hb_004458_020--Hb_000696_280 Hb_005211_200--Hb_007187_020 Hb_005211_200--Hb_000696_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.44997 10.2836 0 0 0.325843 0.0107053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.24491 0

CAGE analysis