Hb_001545_250

Information

Type -
Description -
Location Contig1545: 296481-298404
Sequence    

Annotation

kegg
ID pxb:103936764
description uncharacterized LOC103936764
nr
ID XP_009344908.1
description PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061GBA8
description RNA-directed DNA polymerase (Reverse transcriptase), Polynucleotidyl transferase, Ribonuclease H fold-like protein OS=Theobroma cacao GN=TCM_015967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_250 0.0 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
2 Hb_000201_020 0.0004033004 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
3 Hb_000971_060 0.0024912287 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001403_030 0.0073598623 - - -
5 Hb_010760_010 0.00900151 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_070247_010 0.0147791151 - - hypothetical protein [Pseudomonas tolaasii]
7 Hb_020818_010 0.0163811447 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_000450_140 0.0188146793 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
9 Hb_012286_070 0.0189140053 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_000572_050 0.0418290342 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
11 Hb_005841_030 0.0500663255 - - -
12 Hb_005142_010 0.0543542899 - - -
13 Hb_004785_010 0.0955200633 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_008839_030 0.0960178895 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000174_190 0.0996016333 - - unnamed protein product [Coffea canephora]
16 Hb_076908_010 0.1003188895 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_083493_050 0.10083619 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
18 Hb_149358_010 0.1022040894 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_001110_020 0.1044295298 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
20 Hb_139388_010 0.1049534555 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001545_250 Hb_001545_250 Hb_000201_020 Hb_000201_020 Hb_001545_250--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_001545_250--Hb_000971_060 Hb_001403_030 Hb_001403_030 Hb_001545_250--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_001545_250--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001545_250--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001545_250--Hb_020818_010 Hb_000201_020--Hb_000971_060 Hb_000201_020--Hb_001403_030 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_000971_060--Hb_001403_030 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_001403_030--Hb_010760_010 Hb_001403_030--Hb_070247_010 Hb_001403_030--Hb_020818_010 Hb_010760_010--Hb_070247_010 Hb_010760_010--Hb_020818_010 Hb_000450_140 Hb_000450_140 Hb_010760_010--Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_010760_010--Hb_012286_070 Hb_070247_010--Hb_020818_010 Hb_070247_010--Hb_000450_140 Hb_070247_010--Hb_012286_070 Hb_020818_010--Hb_000450_140 Hb_020818_010--Hb_012286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0709557 0.00745667 0

CAGE analysis