Hb_001546_010

Information

Type -
Description -
Location Contig1546: 11671-12830
Sequence    

Annotation

kegg
ID rcu:RCOM_0653370
description hypothetical protein
nr
ID XP_002521338.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q570U6
description Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
trembl
ID B9S5R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000836_060 0.1400145422 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
3 Hb_012707_040 0.1409647536 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
4 Hb_000768_150 0.1433534966 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
5 Hb_001621_100 0.1438928774 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
6 Hb_000601_040 0.1488083657 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
7 Hb_009803_020 0.1489747515 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
8 Hb_000258_050 0.1603000714 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
9 Hb_006185_030 0.1666927459 - - threonine synthase, putative [Ricinus communis]
10 Hb_004449_250 0.1670073793 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
11 Hb_000106_030 0.1680618735 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000997_320 0.1693064398 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
13 Hb_010390_010 0.1702985072 - - casein kinase, putative [Ricinus communis]
14 Hb_009078_030 0.1708150246 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
15 Hb_002781_050 0.1714837235 - - cytochrome B5 isoform 1, putative [Ricinus communis]
16 Hb_009711_050 0.1735625894 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
17 Hb_001486_350 0.1743769096 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
18 Hb_000580_110 0.1773361097 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
19 Hb_001473_170 0.1790869759 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_030312_030 0.1795820962 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001546_010 Hb_001546_010 Hb_000836_060 Hb_000836_060 Hb_001546_010--Hb_000836_060 Hb_012707_040 Hb_012707_040 Hb_001546_010--Hb_012707_040 Hb_000768_150 Hb_000768_150 Hb_001546_010--Hb_000768_150 Hb_001621_100 Hb_001621_100 Hb_001546_010--Hb_001621_100 Hb_000601_040 Hb_000601_040 Hb_001546_010--Hb_000601_040 Hb_009803_020 Hb_009803_020 Hb_001546_010--Hb_009803_020 Hb_030959_010 Hb_030959_010 Hb_000836_060--Hb_030959_010 Hb_000106_030 Hb_000106_030 Hb_000836_060--Hb_000106_030 Hb_002611_010 Hb_002611_010 Hb_000836_060--Hb_002611_010 Hb_009674_050 Hb_009674_050 Hb_000836_060--Hb_009674_050 Hb_001473_170 Hb_001473_170 Hb_000836_060--Hb_001473_170 Hb_005348_110 Hb_005348_110 Hb_000836_060--Hb_005348_110 Hb_010042_020 Hb_010042_020 Hb_012707_040--Hb_010042_020 Hb_001486_040 Hb_001486_040 Hb_012707_040--Hb_001486_040 Hb_007537_030 Hb_007537_030 Hb_012707_040--Hb_007537_030 Hb_004449_250 Hb_004449_250 Hb_012707_040--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_012707_040--Hb_011360_110 Hb_010390_010 Hb_010390_010 Hb_012707_040--Hb_010390_010 Hb_036388_010 Hb_036388_010 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_002200_070 Hb_002200_070 Hb_001621_100--Hb_002200_070 Hb_001621_100--Hb_000768_150 Hb_003470_110 Hb_003470_110 Hb_001621_100--Hb_003470_110 Hb_000580_110 Hb_000580_110 Hb_001621_100--Hb_000580_110 Hb_002759_070 Hb_002759_070 Hb_001621_100--Hb_002759_070 Hb_000601_040--Hb_010390_010 Hb_000601_040--Hb_001473_170 Hb_000601_040--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_000601_040--Hb_098533_010 Hb_006185_030 Hb_006185_030 Hb_000601_040--Hb_006185_030 Hb_001951_060 Hb_001951_060 Hb_000601_040--Hb_001951_060 Hb_009803_020--Hb_098533_010 Hb_009803_020--Hb_006185_030 Hb_001040_150 Hb_001040_150 Hb_009803_020--Hb_001040_150 Hb_007229_050 Hb_007229_050 Hb_009803_020--Hb_007229_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.689537 2.20663 2.35272 13.9106 0.25976 1.43635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92356 3.06184 1.264 8.37705 12.9903

CAGE analysis