Hb_001546_050

Information

Type -
Description -
Location Contig1546: 31145-32364
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13387: 31204-31582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_050 0.0 - - -
2 Hb_000159_110 0.1489847057 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
3 Hb_009543_020 0.1494972761 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
4 Hb_000051_170 0.1520681791 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000342_080 0.1542686765 - - hypothetical protein L484_019524 [Morus notabilis]
6 Hb_003405_050 0.158494358 - - -
7 Hb_003711_040 0.172402205 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
8 Hb_083043_010 0.175442464 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
9 Hb_058702_010 0.1754545914 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_002811_120 0.1792965708 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
11 Hb_031862_180 0.1800354874 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
12 Hb_006114_020 0.1807463406 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005511_060 0.1809345258 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007044_230 0.1814877592 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
15 Hb_010128_120 0.1817962782 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
16 Hb_000160_220 0.1820356212 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
17 Hb_005714_130 0.182146675 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
18 Hb_150360_010 0.1821724885 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
19 Hb_000991_070 0.1826888936 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
20 Hb_002067_020 0.182857262 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001546_050 Hb_001546_050 Hb_000159_110 Hb_000159_110 Hb_001546_050--Hb_000159_110 Hb_009543_020 Hb_009543_020 Hb_001546_050--Hb_009543_020 Hb_000051_170 Hb_000051_170 Hb_001546_050--Hb_000051_170 Hb_000342_080 Hb_000342_080 Hb_001546_050--Hb_000342_080 Hb_003405_050 Hb_003405_050 Hb_001546_050--Hb_003405_050 Hb_003711_040 Hb_003711_040 Hb_001546_050--Hb_003711_040 Hb_002411_130 Hb_002411_130 Hb_000159_110--Hb_002411_130 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_009119_030 Hb_009119_030 Hb_000159_110--Hb_009119_030 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_001752_040 Hb_001752_040 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_002903_080 Hb_002903_080 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_009543_020--Hb_000342_080 Hb_011671_090 Hb_011671_090 Hb_000051_170--Hb_011671_090 Hb_000991_070 Hb_000991_070 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_000087_030 Hb_000087_030 Hb_000051_170--Hb_000087_030 Hb_000342_080--Hb_002903_080 Hb_007380_090 Hb_007380_090 Hb_000342_080--Hb_007380_090 Hb_000364_060 Hb_000364_060 Hb_000342_080--Hb_000364_060 Hb_000071_180 Hb_000071_180 Hb_000342_080--Hb_000071_180 Hb_002067_020 Hb_002067_020 Hb_003405_050--Hb_002067_020 Hb_001350_010 Hb_001350_010 Hb_003405_050--Hb_001350_010 Hb_000589_150 Hb_000589_150 Hb_003405_050--Hb_000589_150 Hb_003405_050--Hb_007380_090 Hb_114343_010 Hb_114343_010 Hb_003405_050--Hb_114343_010 Hb_003363_010 Hb_003363_010 Hb_003405_050--Hb_003363_010 Hb_003711_040--Hb_083043_010 Hb_006455_090 Hb_006455_090 Hb_003711_040--Hb_006455_090 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.999391 0.785067 0.30772 1.36838 3.02698 5.45993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52181 1.1954 0.199206 0.851427 1.31712

CAGE analysis