Hb_001546_060

Information

Type -
Description -
Location Contig1546: 33615-34755
Sequence    

Annotation

kegg
ID rcu:RCOM_0653260
description hypothetical protein
nr
ID XP_011036413.1
description PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S5R8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13388: 33521-34041 , PASA_asmbl_13389: 34340-34552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_060 0.0 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
2 Hb_001049_110 0.0902880492 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_103118_010 0.0951272385 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
4 Hb_007317_140 0.0993948676 - - expressed protein, putative [Ricinus communis]
5 Hb_000061_210 0.1044906125 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
6 Hb_000415_040 0.1089388663 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
7 Hb_005253_030 0.1111430638 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002811_130 0.1130853967 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_000170_070 0.1134432707 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
10 Hb_086639_040 0.1154197361 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
11 Hb_000215_070 0.1157559694 - - PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]
12 Hb_015941_020 0.1159058551 - - -
13 Hb_029510_050 0.1166288218 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
14 Hb_009658_020 0.1192383758 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
15 Hb_000261_060 0.1202326111 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
16 Hb_001369_750 0.1207161169 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
17 Hb_000861_020 0.1208921168 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
18 Hb_000289_110 0.1215389856 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_001366_180 0.1216800189 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_032258_030 0.1222880574 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]

Gene co-expression network

sample Hb_001546_060 Hb_001546_060 Hb_001049_110 Hb_001049_110 Hb_001546_060--Hb_001049_110 Hb_103118_010 Hb_103118_010 Hb_001546_060--Hb_103118_010 Hb_007317_140 Hb_007317_140 Hb_001546_060--Hb_007317_140 Hb_000061_210 Hb_000061_210 Hb_001546_060--Hb_000061_210 Hb_000415_040 Hb_000415_040 Hb_001546_060--Hb_000415_040 Hb_005253_030 Hb_005253_030 Hb_001546_060--Hb_005253_030 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_028912_050 Hb_028912_050 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_000261_060 Hb_000261_060 Hb_007317_140--Hb_000261_060 Hb_001301_100 Hb_001301_100 Hb_007317_140--Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_007317_140--Hb_001442_040 Hb_003020_030 Hb_003020_030 Hb_007317_140--Hb_003020_030 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_002408_020 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_008790_030 Hb_008790_030 Hb_000415_040--Hb_008790_030 Hb_000170_070 Hb_000170_070 Hb_000415_040--Hb_000170_070 Hb_000179_220 Hb_000179_220 Hb_000415_040--Hb_000179_220 Hb_001369_750 Hb_001369_750 Hb_000415_040--Hb_001369_750 Hb_005504_060 Hb_005504_060 Hb_000415_040--Hb_005504_060 Hb_036790_080 Hb_036790_080 Hb_005253_030--Hb_036790_080 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.837929 0.654355 0.749684 1.178 2.24108 1.45968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9063 2.01981 1.85644 1.37958 2.95741

CAGE analysis