Hb_001546_140

Information

Type -
Description -
Location Contig1546: 117043-117669
Sequence    

Annotation

kegg
ID rcu:RCOM_0652470
description Auxin-binding protein ABP19a precursor, putative (EC:1.15.1.1)
nr
ID XP_002521328.1
description Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
swissprot
ID Q9ZRA4
description Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1
trembl
ID B9S5Q9
description Auxin-binding protein ABP19a, putative OS=Ricinus communis GN=RCOM_0652470 PE=4 SV=1
Gene Ontology
ID GO:0030145
description auxin-binding protein abp19a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13402: 117011-117879
cDNA
(Sanger)
(ID:Location)		 007_G12.ab1: 117016-117814 , 014_H15.ab1: 117011-117781 , 017_A04.ab1: 117011-117783 , 026_I03.ab1: 117020-117686 , 027_G20.ab1: 117018-117752 , 029_M18.ab1: 117013-117602 , 033_K21.ab1: 117013-117715 , 038_H04.ab1: 117008-117814 , 040_I07.ab1: 117018-117805 , 050_B22.ab1: 117011-117704 , 050_D01.ab1: 117011-117806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_140 0.0 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
2 Hb_009771_010 0.0249408831 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
3 Hb_007617_030 0.025847574 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
4 Hb_001153_170 0.0285489095 - - PREDICTED: protein HOTHEAD [Populus euphratica]
5 Hb_089140_130 0.0327667039 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
6 Hb_011316_080 0.0357792553 - - Cucumisin precursor, putative [Ricinus communis]
7 Hb_001433_210 0.0411143071 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
8 Hb_000887_030 0.0424719188 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_000635_240 0.0435382889 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
10 Hb_002929_030 0.0443578919 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
11 Hb_031862_210 0.0465831669 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
12 Hb_006594_030 0.0518465947 - - -
13 Hb_000847_040 0.0606562004 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
14 Hb_147976_010 0.0622036114 - - -
15 Hb_145502_010 0.0624790634 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
16 Hb_002245_050 0.063026108 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
17 Hb_009692_050 0.0646172315 - - -
18 Hb_000979_210 0.0674938142 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000142_050 0.0677436897 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
20 Hb_000836_620 0.0685158732 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001546_140 Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_001546_140--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_001546_140--Hb_007617_030 Hb_001153_170 Hb_001153_170 Hb_001546_140--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_001546_140--Hb_089140_130 Hb_011316_080 Hb_011316_080 Hb_001546_140--Hb_011316_080 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_011316_080 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030 Hb_007617_030--Hb_001153_170 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_089140_130--Hb_011316_080 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030 Hb_011316_080--Hb_000847_040 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_009692_050 Hb_009692_050 Hb_001433_210--Hb_009692_050 Hb_000414_040 Hb_000414_040 Hb_001433_210--Hb_000414_040 Hb_147976_010 Hb_147976_010 Hb_001433_210--Hb_147976_010 Hb_001433_210--Hb_031862_210 Hb_000174_120 Hb_000174_120 Hb_001433_210--Hb_000174_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0691037 360.767 77.0863 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0743841 0 0 192.761

CAGE analysis