Hb_001546_160

Information

Type -
Description -
Location Contig1546: 157461-159541
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q54KA7
description Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at3g12360-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_160 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_001247_110 0.2103004557 - - Polygalacturonase precursor, putative [Ricinus communis]
3 Hb_002799_130 0.2262337952 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
4 Hb_000699_100 0.2300041396 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
5 Hb_002290_020 0.2340714599 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000424_040 0.2392411789 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
7 Hb_001638_310 0.244313148 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
8 Hb_000212_370 0.2454407243 - - thioredoxin f-type, putative [Ricinus communis]
9 Hb_000690_060 0.246600196 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
10 Hb_000023_370 0.2466220216 - - -
11 Hb_003929_220 0.2507250345 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000011_240 0.2514835348 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
13 Hb_010344_020 0.2518643872 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
14 Hb_005016_140 0.2518751748 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000270_600 0.2549690749 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
16 Hb_005288_180 0.2575001497 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_017043_030 0.263620987 - - hypothetical protein CISIN_1g011604mg [Citrus sinensis]
18 Hb_001638_330 0.2646028272 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
19 Hb_003786_080 0.2647480267 - - electron transporter, putative [Ricinus communis]
20 Hb_000120_380 0.2655999715 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001546_160 Hb_001546_160 Hb_001247_110 Hb_001247_110 Hb_001546_160--Hb_001247_110 Hb_002799_130 Hb_002799_130 Hb_001546_160--Hb_002799_130 Hb_000699_100 Hb_000699_100 Hb_001546_160--Hb_000699_100 Hb_002290_020 Hb_002290_020 Hb_001546_160--Hb_002290_020 Hb_000424_040 Hb_000424_040 Hb_001546_160--Hb_000424_040 Hb_001638_310 Hb_001638_310 Hb_001546_160--Hb_001638_310 Hb_001247_110--Hb_002799_130 Hb_005000_080 Hb_005000_080 Hb_001247_110--Hb_005000_080 Hb_007576_070 Hb_007576_070 Hb_001247_110--Hb_007576_070 Hb_000270_600 Hb_000270_600 Hb_001247_110--Hb_000270_600 Hb_001054_070 Hb_001054_070 Hb_001247_110--Hb_001054_070 Hb_005015_020 Hb_005015_020 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002928_030 Hb_002928_030 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_003929_220 Hb_003929_220 Hb_002799_130--Hb_003929_220 Hb_004324_120 Hb_004324_120 Hb_002799_130--Hb_004324_120 Hb_005147_080 Hb_005147_080 Hb_000699_100--Hb_005147_080 Hb_000699_100--Hb_000424_040 Hb_167103_010 Hb_167103_010 Hb_000699_100--Hb_167103_010 Hb_005016_140 Hb_005016_140 Hb_000699_100--Hb_005016_140 Hb_002660_190 Hb_002660_190 Hb_000699_100--Hb_002660_190 Hb_002290_030 Hb_002290_030 Hb_000699_100--Hb_002290_030 Hb_000431_150 Hb_000431_150 Hb_002290_020--Hb_000431_150 Hb_002290_020--Hb_000699_100 Hb_002290_020--Hb_001638_310 Hb_002290_020--Hb_005016_140 Hb_021576_080 Hb_021576_080 Hb_002290_020--Hb_021576_080 Hb_000260_430 Hb_000260_430 Hb_002290_020--Hb_000260_430 Hb_011671_190 Hb_011671_190 Hb_000424_040--Hb_011671_190 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000809_240 Hb_000809_240 Hb_000424_040--Hb_000809_240 Hb_003862_040 Hb_003862_040 Hb_001638_310--Hb_003862_040 Hb_000574_470 Hb_000574_470 Hb_001638_310--Hb_000574_470 Hb_001711_060 Hb_001711_060 Hb_001638_310--Hb_001711_060 Hb_000094_100 Hb_000094_100 Hb_001638_310--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_001638_310--Hb_172632_060 Hb_000056_310 Hb_000056_310 Hb_001638_310--Hb_000056_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00376 1.3243 3.17437 0.206497 0.924027 0.244974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184241 0.144958 1.6818 0.107256 3.35504

CAGE analysis