Hb_001552_030

Information

Type -
Description -
Location Contig1552: 28297-31110
Sequence    

Annotation

kegg
ID rcu:RCOM_0837610
description Galactoside 2-alpha-L-fucosyltransferase, putative (EC:2.4.1.69)
nr
ID XP_012088036.1
description PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SWH5
description Galactoside 2-alpha-L-fucosyltransferase OS=Arabidopsis thaliana GN=FUT1 PE=1 SV=2
trembl
ID B9S905
description Galactoside 2-alpha-L-fucosyltransferase, putative OS=Ricinus communis GN=RCOM_0837610 PE=4 SV=1
Gene Ontology
ID GO:0016020
description galactoside 2-alpha-l-fucosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13474: 30006-31071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001552_030 0.0 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
2 Hb_000017_230 0.0615482917 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
3 Hb_001488_220 0.0661550383 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_001085_290 0.0663323908 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
5 Hb_004109_370 0.0663561818 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_002784_030 0.0679524296 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
7 Hb_121089_030 0.0690796157 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
8 Hb_000001_170 0.0724528822 - - amino acid transporter, putative [Ricinus communis]
9 Hb_102698_010 0.0758883618 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
10 Hb_001821_150 0.0781803368 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
11 Hb_012286_040 0.0783732245 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
12 Hb_031527_030 0.0786258414 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_001307_240 0.0795384223 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
14 Hb_092000_010 0.0817269841 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
15 Hb_140049_080 0.0839378749 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
16 Hb_002007_260 0.0839803441 - - beta-mannosidase, putative [Ricinus communis]
17 Hb_001141_310 0.0842491414 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
18 Hb_001935_160 0.085843553 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_061878_010 0.0865488448 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
20 Hb_019840_030 0.0867661663 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001552_030 Hb_001552_030 Hb_000017_230 Hb_000017_230 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001085_290 Hb_001085_290 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_092000_010 Hb_092000_010 Hb_000017_230--Hb_092000_010 Hb_000017_230--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_000017_230--Hb_000088_050 Hb_008511_020 Hb_008511_020 Hb_001488_220--Hb_008511_020 Hb_001488_220--Hb_002784_030 Hb_007445_010 Hb_007445_010 Hb_001488_220--Hb_007445_010 Hb_000238_030 Hb_000238_030 Hb_001488_220--Hb_000238_030 Hb_001789_030 Hb_001789_030 Hb_001488_220--Hb_001789_030 Hb_001085_290--Hb_000088_050 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_000640_070 Hb_000640_070 Hb_002784_030--Hb_000640_070 Hb_012215_010 Hb_012215_010 Hb_002784_030--Hb_012215_010 Hb_008397_010 Hb_008397_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_073973_150 Hb_073973_150 Hb_002784_030--Hb_073973_150 Hb_030982_010 Hb_030982_010 Hb_121089_030--Hb_030982_010 Hb_121089_030--Hb_021165_010 Hb_000320_290 Hb_000320_290 Hb_121089_030--Hb_000320_290 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87793 4.33537 3.86077 6.19951 3.02941 4.14663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79295 1.48507 2.5164 5.56368 4.06634

CAGE analysis