Hb_001552_080

Information

Type -
Description -
Location Contig1552: 62155-62736
Sequence    

Annotation

kegg
ID rcu:RCOM_0837630
description hypothetical protein
nr
ID XP_002522476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S907
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13478: 62201-62331 , PASA_asmbl_13479: 62526-64017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001552_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000487_320 0.1094159425 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
3 Hb_004005_010 0.109532573 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
4 Hb_011311_010 0.1114855396 - - 60S ribosomal protein L27C [Hevea brasiliensis]
5 Hb_172221_010 0.1136306738 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
6 Hb_026398_010 0.1138661587 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
7 Hb_000963_030 0.1142572405 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
8 Hb_001863_090 0.1165802217 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
9 Hb_002660_030 0.1178976007 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000042_260 0.1223128059 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
11 Hb_000236_460 0.1253876315 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
12 Hb_001269_270 0.125937231 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_000329_020 0.1259874869 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
14 Hb_000661_240 0.1274086548 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
15 Hb_002835_320 0.1292915425 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_000617_090 0.1307076977 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
17 Hb_005496_030 0.1316266937 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
18 Hb_009787_040 0.1329559191 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
19 Hb_000526_040 0.1344838118 - - 60S ribosomal protein L6, putative [Ricinus communis]
20 Hb_002909_130 0.1352744704 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001552_080 Hb_001552_080 Hb_000487_320 Hb_000487_320 Hb_001552_080--Hb_000487_320 Hb_004005_010 Hb_004005_010 Hb_001552_080--Hb_004005_010 Hb_011311_010 Hb_011311_010 Hb_001552_080--Hb_011311_010 Hb_172221_010 Hb_172221_010 Hb_001552_080--Hb_172221_010 Hb_026398_010 Hb_026398_010 Hb_001552_080--Hb_026398_010 Hb_000963_030 Hb_000963_030 Hb_001552_080--Hb_000963_030 Hb_000487_320--Hb_004005_010 Hb_000449_040 Hb_000449_040 Hb_000487_320--Hb_000449_040 Hb_001053_160 Hb_001053_160 Hb_000487_320--Hb_001053_160 Hb_000134_020 Hb_000134_020 Hb_000487_320--Hb_000134_020 Hb_000645_190 Hb_000645_190 Hb_000487_320--Hb_000645_190 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_000329_020 Hb_000329_020 Hb_172221_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_172221_010--Hb_000042_260 Hb_172221_010--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_172221_010--Hb_002588_010 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_000329_020 Hb_026398_010--Hb_000042_260 Hb_026398_010--Hb_002588_010 Hb_011689_050 Hb_011689_050 Hb_000963_030--Hb_011689_050 Hb_007943_140 Hb_007943_140 Hb_000963_030--Hb_007943_140 Hb_000172_420 Hb_000172_420 Hb_000963_030--Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000963_030--Hb_002248_100 Hb_000963_030--Hb_026398_010 Hb_000805_130 Hb_000805_130 Hb_000963_030--Hb_000805_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7609 2.73245 2.89379 4.36369 6.37877 12.0832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1556 52.4558 11.9856 10.5991 1.82216

CAGE analysis