Hb_001554_010

Information

Type -
Description -
Location Contig1554: 6712-8734
Sequence    

Annotation

kegg
ID cit:102620018
description telomere repeat-binding factor 4-like
nr
ID XP_012068940.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4I7L1
description Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2
trembl
ID A0A067KX39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13493: 7653-8421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001554_010 0.0 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_021576_020 0.1950350135 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
3 Hb_003464_070 0.2135750818 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
4 Hb_026549_010 0.2189158815 - - -
5 Hb_002998_070 0.2261865806 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
6 Hb_010889_020 0.2366255844 - - -
7 Hb_023344_070 0.2470332266 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_011930_150 0.2515145456 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_000384_110 0.2533491544 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005725_050 0.2534363283 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
11 Hb_071130_050 0.2539857225 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
12 Hb_001124_220 0.2543604563 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
13 Hb_004137_100 0.2557321612 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
14 Hb_000035_200 0.2560613674 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
15 Hb_000270_520 0.2574494095 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
16 Hb_001767_130 0.2580662647 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
17 Hb_003001_090 0.2595711687 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
18 Hb_006002_040 0.2599453199 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
19 Hb_000868_050 0.2611493093 - - RAD51 homolog [Populus nigra]
20 Hb_009571_010 0.2631346317 - - early-responsive to dehydration family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001554_010 Hb_001554_010 Hb_021576_020 Hb_021576_020 Hb_001554_010--Hb_021576_020 Hb_003464_070 Hb_003464_070 Hb_001554_010--Hb_003464_070 Hb_026549_010 Hb_026549_010 Hb_001554_010--Hb_026549_010 Hb_002998_070 Hb_002998_070 Hb_001554_010--Hb_002998_070 Hb_010889_020 Hb_010889_020 Hb_001554_010--Hb_010889_020 Hb_023344_070 Hb_023344_070 Hb_001554_010--Hb_023344_070 Hb_021576_020--Hb_002998_070 Hb_007904_240 Hb_007904_240 Hb_021576_020--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_000038_120 Hb_000038_120 Hb_003464_070--Hb_000038_120 Hb_002685_150 Hb_002685_150 Hb_003464_070--Hb_002685_150 Hb_001767_130 Hb_001767_130 Hb_003464_070--Hb_001767_130 Hb_001584_260 Hb_001584_260 Hb_003464_070--Hb_001584_260 Hb_011930_150 Hb_011930_150 Hb_003464_070--Hb_011930_150 Hb_003464_070--Hb_002998_070 Hb_002217_470 Hb_002217_470 Hb_026549_010--Hb_002217_470 Hb_000868_050 Hb_000868_050 Hb_026549_010--Hb_000868_050 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000654_030 Hb_000654_030 Hb_026549_010--Hb_000654_030 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_000608_220 Hb_000608_220 Hb_010889_020--Hb_000608_220 Hb_027402_080 Hb_027402_080 Hb_010889_020--Hb_027402_080 Hb_144096_010 Hb_144096_010 Hb_010889_020--Hb_144096_010 Hb_002876_160 Hb_002876_160 Hb_010889_020--Hb_002876_160 Hb_000384_110 Hb_000384_110 Hb_010889_020--Hb_000384_110 Hb_026198_030 Hb_026198_030 Hb_023344_070--Hb_026198_030 Hb_023344_070--Hb_000384_110 Hb_023344_070--Hb_002876_160 Hb_018118_030 Hb_018118_030 Hb_023344_070--Hb_018118_030 Hb_001123_240 Hb_001123_240 Hb_023344_070--Hb_001123_240 Hb_000398_050 Hb_000398_050 Hb_023344_070--Hb_000398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14606 0.601343 1.65339 2.79647 1.15152 0.688938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.34782 0.547602 2.37177 1.77011 0

CAGE analysis