Hb_001557_030

Information

Type -
Description -
Location Contig1557: 56134-58297
Sequence    

Annotation

kegg
ID cic:CICLE_v10005306mg
description hypothetical protein
nr
ID XP_006422259.1
description hypothetical protein CICLE_v10005306mg [Citrus clementina]
swissprot
ID O81123
description Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1
trembl
ID A0A067FEE0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018732mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13507: 57704-58118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001557_030 0.0 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
2 Hb_150179_010 0.0425342032 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
3 Hb_014834_100 0.0535257858 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
4 Hb_011224_030 0.064891655 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_007007_140 0.0706370817 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
6 Hb_001887_010 0.0723951743 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_029584_030 0.0749335274 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
8 Hb_004732_080 0.0752695535 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
9 Hb_003685_070 0.0757088312 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
10 Hb_002073_210 0.0772200204 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002308_040 0.0774606196 - - methyladenine glycosylase family protein [Populus trichocarpa]
12 Hb_000664_010 0.0788482577 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
13 Hb_002471_310 0.0798724331 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_024066_020 0.0816772883 - - P66 protein [Hevea brasiliensis]
15 Hb_003754_010 0.082922926 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
16 Hb_004957_010 0.0849470232 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
17 Hb_000331_380 0.0851538958 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
18 Hb_004396_020 0.0853782151 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
19 Hb_000731_180 0.0887366832 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
20 Hb_003152_010 0.0898020274 - - -

Gene co-expression network

sample Hb_001557_030 Hb_001557_030 Hb_150179_010 Hb_150179_010 Hb_001557_030--Hb_150179_010 Hb_014834_100 Hb_014834_100 Hb_001557_030--Hb_014834_100 Hb_011224_030 Hb_011224_030 Hb_001557_030--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_001557_030--Hb_007007_140 Hb_001887_010 Hb_001887_010 Hb_001557_030--Hb_001887_010 Hb_029584_030 Hb_029584_030 Hb_001557_030--Hb_029584_030 Hb_150179_010--Hb_011224_030 Hb_150179_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_150179_010--Hb_000664_010 Hb_150179_010--Hb_007007_140 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_103468_010 Hb_103468_010 Hb_014834_100--Hb_103468_010 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_011224_030--Hb_000664_010 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_007007_140--Hb_024066_020 Hb_004396_020 Hb_004396_020 Hb_007007_140--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_002308_040 Hb_007007_140--Hb_002471_310 Hb_001887_010--Hb_003685_070 Hb_001887_010--Hb_150179_010 Hb_003765_010 Hb_003765_010 Hb_001887_010--Hb_003765_010 Hb_005357_170 Hb_005357_170 Hb_001887_010--Hb_005357_170 Hb_001887_010--Hb_002073_210 Hb_029584_030--Hb_000664_010 Hb_005665_100 Hb_005665_100 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.376621 3.84 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140652 0.433324

CAGE analysis