Hb_001558_060

Information

Type -
Description -
Location Contig1558: 37746-48211
Sequence    

Annotation

kegg
ID rcu:RCOM_0070070
description cysteine-type endopeptidase, putative (EC:3.1.2.15)
nr
ID XP_012081651.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
swissprot
ID Q9FKP5
description Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1
trembl
ID A0A0B0PNT4
description Ubiquitin carboxyl-terminal hydrolase 17 OS=Gossypium arboreum GN=F383_02644 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13517: 39086-48072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001558_060 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
2 Hb_023226_070 0.0755402264 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000375_290 0.0767525132 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_008165_030 0.0816303791 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
5 Hb_003992_180 0.0820893311 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_000579_190 0.0848626888 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
7 Hb_002811_040 0.087047578 - - 5'->3' exoribonuclease, putative [Ricinus communis]
8 Hb_000048_080 0.0893724734 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
9 Hb_000500_300 0.0903614595 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
10 Hb_010287_020 0.0908364677 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_000086_430 0.0913261354 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
12 Hb_002056_100 0.0919675336 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
13 Hb_000207_200 0.0930866626 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
14 Hb_000868_120 0.09440376 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
15 Hb_004319_050 0.0945616383 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
16 Hb_003849_140 0.0949893411 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
17 Hb_060094_020 0.0951626164 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
18 Hb_004943_030 0.0954354194 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
19 Hb_004236_030 0.0955195639 - - unknown [Lotus japonicus]
20 Hb_000723_110 0.0958734472 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001558_060 Hb_001558_060 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_000375_290 Hb_000375_290 Hb_001558_060--Hb_000375_290 Hb_008165_030 Hb_008165_030 Hb_001558_060--Hb_008165_030 Hb_003992_180 Hb_003992_180 Hb_001558_060--Hb_003992_180 Hb_000579_190 Hb_000579_190 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_023226_070--Hb_002811_040 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_000375_290--Hb_000579_190 Hb_000375_290--Hb_023226_070 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_001005_020 Hb_001005_020 Hb_000579_190--Hb_001005_020 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75782 5.4511 5.85824 1.86447 1.93232 2.10259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21599 1.59463 1.54565 2.21336 2.65874

CAGE analysis