Hb_001558_080

Information

Type -
Description -
Location Contig1558: 62276-66911
Sequence    

Annotation

kegg
ID cic:CICLE_v10026488mg
description hypothetical protein
nr
ID XP_012081646.1
description PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8LDD3
description Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana GN=CURT1D PE=1 SV=1
trembl
ID V4SKY6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026488mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13519: 62309-64856 , PASA_asmbl_13520: 62278-64892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001558_080 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_006846_150 0.1052406909 - - conserved hypothetical protein [Ricinus communis]
3 Hb_044653_040 0.1056857945 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
4 Hb_000811_070 0.1071901573 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
5 Hb_011689_120 0.1114285548 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
6 Hb_000487_260 0.1121101553 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
7 Hb_001900_140 0.1152861938 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
8 Hb_009252_060 0.1161574865 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
9 Hb_005843_140 0.1182426028 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
10 Hb_002759_190 0.1189282205 - - PREDICTED: protein NLRC3 [Jatropha curcas]
11 Hb_019053_060 0.1191517262 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
12 Hb_001287_040 0.1201350935 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
13 Hb_001587_180 0.1209890475 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
14 Hb_003669_020 0.121185742 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
15 Hb_062226_060 0.1223892589 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
16 Hb_007558_090 0.1229253522 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_003462_160 0.1229646487 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
18 Hb_004123_020 0.1232269512 - - amino acid binding protein, putative [Ricinus communis]
19 Hb_000173_250 0.1234961003 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
20 Hb_003462_180 0.1243326779 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001558_080 Hb_001558_080 Hb_006846_150 Hb_006846_150 Hb_001558_080--Hb_006846_150 Hb_044653_040 Hb_044653_040 Hb_001558_080--Hb_044653_040 Hb_000811_070 Hb_000811_070 Hb_001558_080--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_001558_080--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_001558_080--Hb_000487_260 Hb_001900_140 Hb_001900_140 Hb_001558_080--Hb_001900_140 Hb_006846_150--Hb_000811_070 Hb_006846_150--Hb_011689_120 Hb_000403_070 Hb_000403_070 Hb_006846_150--Hb_000403_070 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260 Hb_019053_060 Hb_019053_060 Hb_000487_260--Hb_019053_060 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_001935_100 Hb_001935_100 Hb_000487_260--Hb_001935_100 Hb_000487_260--Hb_008421_020 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_001900_140--Hb_007904_230 Hb_005946_040 Hb_005946_040 Hb_001900_140--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2178 30.6267 68.9061 27.621 13.2649 14.0069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8063 79.9152 37.56 23.6354 70.6193

CAGE analysis