Hb_001558_090

Information

Type -
Description -
Location Contig1558: 65482-79336
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_E16r.ab1: 62420-64856

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001558_090 0.0 - - -
2 Hb_004976_020 0.2033668458 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
3 Hb_000116_310 0.2096090766 - - 50S robosomal protein L11, putative [Ricinus communis]
4 Hb_002374_280 0.2121315496 - - -
5 Hb_001369_220 0.2126201606 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
6 Hb_011609_100 0.2158753565 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
7 Hb_000640_230 0.2162127258 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_070 0.2187723149 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
9 Hb_002007_300 0.2235578377 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
10 Hb_028900_010 0.2240784289 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
11 Hb_000010_250 0.2245406909 - - PREDICTED: protein tipD [Jatropha curcas]
12 Hb_002918_210 0.2259497579 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
13 Hb_003935_020 0.2260826858 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001575_100 0.2273815294 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
15 Hb_000959_210 0.2284238668 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
16 Hb_003992_240 0.229523457 - - -
17 Hb_003952_090 0.2319188325 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
18 Hb_001014_050 0.2321591447 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
19 Hb_006502_090 0.2322922472 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
20 Hb_005016_090 0.2329992565 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]

Gene co-expression network

sample Hb_001558_090 Hb_001558_090 Hb_004976_020 Hb_004976_020 Hb_001558_090--Hb_004976_020 Hb_000116_310 Hb_000116_310 Hb_001558_090--Hb_000116_310 Hb_002374_280 Hb_002374_280 Hb_001558_090--Hb_002374_280 Hb_001369_220 Hb_001369_220 Hb_001558_090--Hb_001369_220 Hb_011609_100 Hb_011609_100 Hb_001558_090--Hb_011609_100 Hb_000640_230 Hb_000640_230 Hb_001558_090--Hb_000640_230 Hb_021422_010 Hb_021422_010 Hb_004976_020--Hb_021422_010 Hb_003849_060 Hb_003849_060 Hb_004976_020--Hb_003849_060 Hb_000808_250 Hb_000808_250 Hb_004976_020--Hb_000808_250 Hb_000359_330 Hb_000359_330 Hb_004976_020--Hb_000359_330 Hb_000334_270 Hb_000334_270 Hb_004976_020--Hb_000334_270 Hb_006623_020 Hb_006623_020 Hb_004976_020--Hb_006623_020 Hb_000444_080 Hb_000444_080 Hb_000116_310--Hb_000444_080 Hb_000116_310--Hb_011609_100 Hb_005332_070 Hb_005332_070 Hb_000116_310--Hb_005332_070 Hb_001898_230 Hb_001898_230 Hb_000116_310--Hb_001898_230 Hb_000275_170 Hb_000275_170 Hb_000116_310--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_000116_310--Hb_000959_210 Hb_000487_420 Hb_000487_420 Hb_002374_280--Hb_000487_420 Hb_000181_120 Hb_000181_120 Hb_002374_280--Hb_000181_120 Hb_002374_280--Hb_004976_020 Hb_000649_070 Hb_000649_070 Hb_002374_280--Hb_000649_070 Hb_028900_010 Hb_028900_010 Hb_002374_280--Hb_028900_010 Hb_012753_170 Hb_012753_170 Hb_002374_280--Hb_012753_170 Hb_003952_090 Hb_003952_090 Hb_001369_220--Hb_003952_090 Hb_002477_280 Hb_002477_280 Hb_001369_220--Hb_002477_280 Hb_001481_090 Hb_001481_090 Hb_001369_220--Hb_001481_090 Hb_000041_270 Hb_000041_270 Hb_001369_220--Hb_000041_270 Hb_002205_040 Hb_002205_040 Hb_001369_220--Hb_002205_040 Hb_001369_220--Hb_000959_210 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_004044_020 Hb_004044_020 Hb_000640_230--Hb_004044_020 Hb_003097_150 Hb_003097_150 Hb_000640_230--Hb_003097_150 Hb_002007_250 Hb_002007_250 Hb_000640_230--Hb_002007_250 Hb_010128_130 Hb_010128_130 Hb_000640_230--Hb_010128_130 Hb_000207_310 Hb_000207_310 Hb_000640_230--Hb_000207_310 Hb_002367_130 Hb_002367_130 Hb_000640_230--Hb_002367_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182494 0.0739677 0.0353639 0.0199285 0.152071 0.0487163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0207711 0.212469 0.031053 0.0519826 0.0692269

CAGE analysis