Hb_001563_010

Information

Type transcription factor
Description TF Family: SET
Location Contig1563: 7129-24557
Sequence    

Annotation

kegg
ID rcu:RCOM_1546600
description huntingtin interacting protein, putative (EC:2.1.1.43)
nr
ID XP_012084659.1
description PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
swissprot
ID O23372
description Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2
trembl
ID A0A067K671
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20287 PE=4 SV=1
Gene Ontology
ID GO:0042800
description probable histone-lysine n-methyltransferase atxr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13579: 7189-20453 , PASA_asmbl_13580: 20520-23173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001563_010 0.0 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
2 Hb_006816_370 0.0456018194 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
3 Hb_001648_020 0.0698078819 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
4 Hb_009150_020 0.0713847679 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
5 Hb_000579_010 0.0808097913 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
6 Hb_000181_340 0.0813548074 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_001488_180 0.0819990846 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
8 Hb_000445_090 0.0848422823 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
9 Hb_001279_120 0.0856137329 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
10 Hb_000958_050 0.0871440964 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
11 Hb_004079_060 0.0871932674 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
12 Hb_062226_070 0.0883545431 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
13 Hb_001005_130 0.0888411924 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
14 Hb_000170_130 0.089064189 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
15 Hb_001279_040 0.0890921143 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
16 Hb_008053_040 0.0918461012 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
17 Hb_005701_130 0.0920004689 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
18 Hb_002783_040 0.0945166798 transcription factor TF Family: IWS1 -
19 Hb_000193_330 0.0945901597 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
20 Hb_001999_290 0.0952168643 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001563_010 Hb_001563_010 Hb_006816_370 Hb_006816_370 Hb_001563_010--Hb_006816_370 Hb_001648_020 Hb_001648_020 Hb_001563_010--Hb_001648_020 Hb_009150_020 Hb_009150_020 Hb_001563_010--Hb_009150_020 Hb_000579_010 Hb_000579_010 Hb_001563_010--Hb_000579_010 Hb_000181_340 Hb_000181_340 Hb_001563_010--Hb_000181_340 Hb_001488_180 Hb_001488_180 Hb_001563_010--Hb_001488_180 Hb_006816_370--Hb_001648_020 Hb_001005_130 Hb_001005_130 Hb_006816_370--Hb_001005_130 Hb_000170_130 Hb_000170_130 Hb_006816_370--Hb_000170_130 Hb_000538_280 Hb_000538_280 Hb_006816_370--Hb_000538_280 Hb_000193_330 Hb_000193_330 Hb_006816_370--Hb_000193_330 Hb_005186_040 Hb_005186_040 Hb_001648_020--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001648_020--Hb_012244_020 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_011174_020 Hb_011174_020 Hb_001648_020--Hb_011174_020 Hb_000934_210 Hb_000934_210 Hb_001648_020--Hb_000934_210 Hb_006117_080 Hb_006117_080 Hb_009150_020--Hb_006117_080 Hb_001279_120 Hb_001279_120 Hb_009150_020--Hb_001279_120 Hb_002783_040 Hb_002783_040 Hb_009150_020--Hb_002783_040 Hb_003470_080 Hb_003470_080 Hb_009150_020--Hb_003470_080 Hb_002798_070 Hb_002798_070 Hb_009150_020--Hb_002798_070 Hb_000069_470 Hb_000069_470 Hb_009150_020--Hb_000069_470 Hb_013405_160 Hb_013405_160 Hb_000579_010--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_000579_010--Hb_000703_130 Hb_003939_060 Hb_003939_060 Hb_000579_010--Hb_003939_060 Hb_000958_050 Hb_000958_050 Hb_000579_010--Hb_000958_050 Hb_000083_070 Hb_000083_070 Hb_000579_010--Hb_000083_070 Hb_000099_040 Hb_000099_040 Hb_000579_010--Hb_000099_040 Hb_000181_340--Hb_000193_330 Hb_012632_010 Hb_012632_010 Hb_000181_340--Hb_012632_010 Hb_062226_070 Hb_062226_070 Hb_000181_340--Hb_062226_070 Hb_004374_110 Hb_004374_110 Hb_000181_340--Hb_004374_110 Hb_000103_340 Hb_000103_340 Hb_000181_340--Hb_000103_340 Hb_001999_290 Hb_001999_290 Hb_000181_340--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61496 19.4026 10.9286 8.044 10.6372 9.07385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10783 8.09095 10.2311 7.76144 19.7261

CAGE analysis