Hb_001563_020

Information

Type transcription factor
Description TF Family: TRAF
Location Contig1563: 65032-67092
Sequence    

Annotation

kegg
ID rcu:RCOM_1108240
description aberrant large forked product, putative
nr
ID XP_002531503.1
description aberrant large forked product, putative [Ricinus communis]
swissprot
ID Q9ZVC2
description Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1
trembl
ID B9SZT4
description Aberrant large forked product, putative OS=Ricinus communis GN=RCOM_1108240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13582: 65699-66901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001563_020 0.0 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
2 Hb_002157_090 0.1503730457 - - hypothetical protein VITISV_041741 [Vitis vinifera]
3 Hb_001584_030 0.1917698758 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
4 Hb_002081_170 0.2334827417 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_000603_010 0.2431146879 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
6 Hb_000414_150 0.2470568659 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_004241_010 0.2476529159 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
8 Hb_005045_050 0.2669103748 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
9 Hb_000136_160 0.2688755535 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_118094_010 0.2700989657 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
11 Hb_004158_100 0.271931975 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
12 Hb_006376_010 0.2858847325 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
13 Hb_001832_150 0.3052193439 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
14 Hb_015586_010 0.3057177091 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
15 Hb_092233_010 0.3060390114 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
16 Hb_004097_040 0.3073875107 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_004200_030 0.3102665776 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
18 Hb_124996_010 0.310684469 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_000111_230 0.3117432717 - - -
20 Hb_182005_010 0.3167175126 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]

Gene co-expression network

sample Hb_001563_020 Hb_001563_020 Hb_002157_090 Hb_002157_090 Hb_001563_020--Hb_002157_090 Hb_001584_030 Hb_001584_030 Hb_001563_020--Hb_001584_030 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_000603_010 Hb_000603_010 Hb_001563_020--Hb_000603_010 Hb_000414_150 Hb_000414_150 Hb_001563_020--Hb_000414_150 Hb_004241_010 Hb_004241_010 Hb_001563_020--Hb_004241_010 Hb_002157_090--Hb_001584_030 Hb_002157_090--Hb_004241_010 Hb_015586_010 Hb_015586_010 Hb_002157_090--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_002157_090--Hb_012379_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_001584_030--Hb_000603_010 Hb_001584_030--Hb_004241_010 Hb_133661_010 Hb_133661_010 Hb_001584_030--Hb_133661_010 Hb_001355_120 Hb_001355_120 Hb_001584_030--Hb_001355_120 Hb_044555_010 Hb_044555_010 Hb_002081_170--Hb_044555_010 Hb_004200_030 Hb_004200_030 Hb_002081_170--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_002081_170--Hb_004097_040 Hb_033594_070 Hb_033594_070 Hb_002081_170--Hb_033594_070 Hb_007386_010 Hb_007386_010 Hb_002081_170--Hb_007386_010 Hb_000603_010--Hb_001355_120 Hb_004158_100 Hb_004158_100 Hb_000603_010--Hb_004158_100 Hb_002874_020 Hb_002874_020 Hb_000603_010--Hb_002874_020 Hb_000603_010--Hb_133661_010 Hb_000414_150--Hb_004241_010 Hb_002094_040 Hb_002094_040 Hb_000414_150--Hb_002094_040 Hb_006376_010 Hb_006376_010 Hb_000414_150--Hb_006376_010 Hb_000111_230 Hb_000111_230 Hb_000414_150--Hb_000111_230 Hb_005714_050 Hb_005714_050 Hb_000414_150--Hb_005714_050 Hb_004241_010--Hb_012379_010 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.10485 0.119816 3.28344 0 0.0456051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63463 2.4551 0 0 0.0643948

CAGE analysis