Hb_001564_080

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig1564: 106128-111731
Sequence    

Annotation

kegg
ID rcu:RCOM_1618480
description TATA-binding protein-associated phosphoprotein, putative
nr
ID XP_012092933.1
description PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
swissprot
ID P49592
description Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
trembl
ID B9RE59
description TATA-binding protein-associated phosphoprotein, putative OS=Ricinus communis GN=RCOM_1618480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein dr1 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13591: 106197-111837
cDNA
(Sanger)
(ID:Location)		 040_G17.ab1: 106194-111792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_080 0.0 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
2 Hb_005653_060 0.1033600842 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
3 Hb_001894_050 0.1086336705 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
4 Hb_005551_050 0.1119149115 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
5 Hb_189208_020 0.1206599857 - - LRX2, putative [Ricinus communis]
6 Hb_001817_160 0.1227503298 - - conserved hypothetical protein [Ricinus communis]
7 Hb_115241_010 0.1259003072 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
8 Hb_009767_100 0.1264851293 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
9 Hb_003055_060 0.128164486 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
10 Hb_028487_020 0.1310597695 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
11 Hb_001247_120 0.1324946894 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
12 Hb_005306_190 0.1329538878 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
13 Hb_000432_040 0.1332053206 - - PREDICTED: remorin-like [Jatropha curcas]
14 Hb_000696_090 0.1340636442 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
15 Hb_000252_150 0.1343928733 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005551_060 0.1348540019 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
17 Hb_000179_070 0.1350715038 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
18 Hb_003175_030 0.1354927108 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_002042_130 0.1370810536 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
20 Hb_012055_060 0.1381024871 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001564_080 Hb_001564_080 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_001894_050 Hb_001894_050 Hb_001564_080--Hb_001894_050 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010 Hb_005653_060--Hb_005551_050 Hb_000635_180 Hb_000635_180 Hb_005653_060--Hb_000635_180 Hb_007426_180 Hb_007426_180 Hb_005653_060--Hb_007426_180 Hb_000221_210 Hb_000221_210 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_189208_020 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_002042_130 Hb_002042_130 Hb_001894_050--Hb_002042_130 Hb_005551_050--Hb_007426_180 Hb_003376_350 Hb_003376_350 Hb_005551_050--Hb_003376_350 Hb_000679_090 Hb_000679_090 Hb_005551_050--Hb_000679_090 Hb_004032_270 Hb_004032_270 Hb_005551_050--Hb_004032_270 Hb_002097_200 Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_010997_080 Hb_010997_080 Hb_001817_160--Hb_010997_080 Hb_000976_310 Hb_000976_310 Hb_001817_160--Hb_000976_310 Hb_000189_560 Hb_000189_560 Hb_001817_160--Hb_000189_560 Hb_005306_190 Hb_005306_190 Hb_001817_160--Hb_005306_190 Hb_001856_230 Hb_001856_230 Hb_001817_160--Hb_001856_230 Hb_000975_360 Hb_000975_360 Hb_115241_010--Hb_000975_360 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_021888_050 Hb_021888_050 Hb_115241_010--Hb_021888_050 Hb_115241_010--Hb_005653_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.6188 195.674 49.6601 46.1518 56.0402 55.9078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.162 115.818 71.1541 52.6645 24.0573

CAGE analysis