Hb_001564_100

Information

Type -
Description -
Location Contig1564: 119882-124228
Sequence    

Annotation

kegg
ID rcu:RCOM_1618460
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_002511996.1
description Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
swissprot
ID Q7ZXX2
description Kinesin-like protein KIF19 OS=Xenopus laevis GN=kif19 PE=2 SV=1
trembl
ID B9RE57
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1618460 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kif18b isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13596: 120157-121394 , PASA_asmbl_13597: 121431-124208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_100 0.0 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
2 Hb_006788_130 0.0398587935 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
3 Hb_000084_230 0.0433167747 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
4 Hb_001235_040 0.0698239055 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
5 Hb_001220_020 0.0797465061 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_011859_010 0.0801705659 - - hypothetical protein VITISV_027923 [Vitis vinifera]
7 Hb_006332_030 0.0806674622 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
8 Hb_028995_020 0.0843356145 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
9 Hb_002473_030 0.0850016485 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
10 Hb_011218_020 0.0891714511 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004174_030 0.0895391058 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
12 Hb_003398_050 0.09314179 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
13 Hb_004097_030 0.0936962183 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
14 Hb_005649_050 0.0951752513 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004007_080 0.0953171151 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
16 Hb_002205_220 0.0960813006 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
17 Hb_005914_100 0.0985180523 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001699_090 0.0993291635 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008406_150 0.0996011474 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
20 Hb_002078_310 0.1003701396 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]

Gene co-expression network

sample Hb_001564_100 Hb_001564_100 Hb_006788_130 Hb_006788_130 Hb_001564_100--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001564_100--Hb_000084_230 Hb_001235_040 Hb_001235_040 Hb_001564_100--Hb_001235_040 Hb_001220_020 Hb_001220_020 Hb_001564_100--Hb_001220_020 Hb_011859_010 Hb_011859_010 Hb_001564_100--Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_001564_100--Hb_006332_030 Hb_006788_130--Hb_000084_230 Hb_006788_130--Hb_001235_040 Hb_006788_130--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_000084_230--Hb_001235_040 Hb_000084_230--Hb_004174_030 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_004032_390 Hb_004032_390 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_011859_010--Hb_006332_030 Hb_011859_010--Hb_028995_020 Hb_011218_020 Hb_011218_020 Hb_011859_010--Hb_011218_020 Hb_000175_110 Hb_000175_110 Hb_011859_010--Hb_000175_110 Hb_005918_020 Hb_005918_020 Hb_011859_010--Hb_005918_020 Hb_006332_030--Hb_011218_020 Hb_006332_030--Hb_028995_020 Hb_012368_040 Hb_012368_040 Hb_006332_030--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_006332_030--Hb_003464_040 Hb_000563_110 Hb_000563_110 Hb_006332_030--Hb_000563_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.048188 0.165491 18.2075 4.13691 0.00789018 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.335094 0.543264

CAGE analysis