Hb_001565_060

Information

Type -
Description -
Location Contig1565: 48831-49775
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09500g
description POPTRDRAFT_262082; hypothetical protein
nr
ID XP_012076875.1
description PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
swissprot
ID Q9SZE1
description Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial OS=Arabidopsis thaliana GN=At4g29120 PE=2 SV=1
trembl
ID A0A067KFP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07369 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable 3-hydroxyisobutyrate dehydrogenase-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13608: 48660-49853
cDNA
(Sanger)
(ID:Location)		 018_M22.ab1: 48714-49432 , 028_A07.ab1: 49173-49432 , 050_I02.ab1: 48720-49432

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_060 0.0 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
2 Hb_003089_030 0.0891409568 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
3 Hb_000122_220 0.1184339848 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
4 Hb_128695_030 0.1239235779 - - heat shock protein, putative [Ricinus communis]
5 Hb_001565_020 0.1283053508 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
6 Hb_001454_220 0.1289506016 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
7 Hb_000343_150 0.1412399524 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
8 Hb_011161_020 0.1414690858 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
9 Hb_012082_010 0.1415628154 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
10 Hb_003018_040 0.1420114935 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_000890_010 0.1447143266 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005054_190 0.1455770923 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
13 Hb_007849_050 0.1457513314 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
14 Hb_007576_220 0.1465719224 - - PREDICTED: kanadaptin [Jatropha curcas]
15 Hb_004236_010 0.1481285063 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
16 Hb_008165_030 0.1490452563 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
17 Hb_006132_040 0.1499747306 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
18 Hb_000358_200 0.1513717143 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
19 Hb_000056_300 0.1518610483 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
20 Hb_000869_030 0.1519445953 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001565_060 Hb_001565_060 Hb_003089_030 Hb_003089_030 Hb_001565_060--Hb_003089_030 Hb_000122_220 Hb_000122_220 Hb_001565_060--Hb_000122_220 Hb_128695_030 Hb_128695_030 Hb_001565_060--Hb_128695_030 Hb_001565_020 Hb_001565_020 Hb_001565_060--Hb_001565_020 Hb_001454_220 Hb_001454_220 Hb_001565_060--Hb_001454_220 Hb_000343_150 Hb_000343_150 Hb_001565_060--Hb_000343_150 Hb_007576_220 Hb_007576_220 Hb_003089_030--Hb_007576_220 Hb_004236_010 Hb_004236_010 Hb_003089_030--Hb_004236_010 Hb_007576_230 Hb_007576_230 Hb_003089_030--Hb_007576_230 Hb_011161_020 Hb_011161_020 Hb_003089_030--Hb_011161_020 Hb_003089_030--Hb_000122_220 Hb_000358_200 Hb_000358_200 Hb_000122_220--Hb_000358_200 Hb_004659_090 Hb_004659_090 Hb_000122_220--Hb_004659_090 Hb_006185_060 Hb_006185_060 Hb_000122_220--Hb_006185_060 Hb_000122_220--Hb_011161_020 Hb_001231_090 Hb_001231_090 Hb_000122_220--Hb_001231_090 Hb_002687_090 Hb_002687_090 Hb_000122_220--Hb_002687_090 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_128695_030--Hb_001565_020 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_001565_020--Hb_178127_010 Hb_001565_020--Hb_001454_220 Hb_000422_110 Hb_000422_110 Hb_001565_020--Hb_000422_110 Hb_153161_010 Hb_153161_010 Hb_001565_020--Hb_153161_010 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_001454_220--Hb_007576_220 Hb_001558_060 Hb_001558_060 Hb_000343_150--Hb_001558_060 Hb_008165_030 Hb_008165_030 Hb_000343_150--Hb_008165_030 Hb_013405_150 Hb_013405_150 Hb_000343_150--Hb_013405_150 Hb_000343_150--Hb_004236_010 Hb_000723_110 Hb_000723_110 Hb_000343_150--Hb_000723_110 Hb_003605_050 Hb_003605_050 Hb_000343_150--Hb_003605_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.9694 114.838 76.3042 33.6572 52.2263 23.9021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47392 10.6535 35.0657 19.2982 40.5287

CAGE analysis