Hb_001565_100

Information

Type -
Description -
Location Contig1565: 76074-78761
Sequence    

Annotation

kegg
ID cic:CICLE_v10009944mg
description hypothetical protein
nr
ID CDP03257.1
description unnamed protein product [Coffea canephora]
swissprot
ID O22704
description Cytochrome B5-like protein OS=Arabidopsis thaliana GN=CB5LP PE=2 SV=1
trembl
ID A0A068U4P6
description Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041776001 PE=3 SV=1
Gene Ontology
ID GO:0004128
description cytochrome b5-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_100 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002078_430 0.1450444766 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
3 Hb_011609_030 0.1564258251 - - conserved hypothetical protein 13 [Hevea brasiliensis]
4 Hb_000714_020 0.1600723102 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
5 Hb_074683_020 0.1601007402 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
6 Hb_003849_080 0.1610856203 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000038_130 0.1621487266 - - -
8 Hb_000012_180 0.1648591821 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001956_120 0.1649231199 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005217_020 0.1652788158 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
11 Hb_003813_200 0.1675385025 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001623_370 0.1677416972 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000416_100 0.1724560239 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
14 Hb_000363_340 0.1724801535 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
15 Hb_005741_020 0.1736763074 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
16 Hb_004032_460 0.176227216 - - -
17 Hb_000264_060 0.1769224837 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
18 Hb_003859_010 0.1784145349 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
19 Hb_004662_010 0.1790517053 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
20 Hb_001825_010 0.1796632068 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001565_100 Hb_001565_100 Hb_002078_430 Hb_002078_430 Hb_001565_100--Hb_002078_430 Hb_011609_030 Hb_011609_030 Hb_001565_100--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_001565_100--Hb_000714_020 Hb_074683_020 Hb_074683_020 Hb_001565_100--Hb_074683_020 Hb_003849_080 Hb_003849_080 Hb_001565_100--Hb_003849_080 Hb_000038_130 Hb_000038_130 Hb_001565_100--Hb_000038_130 Hb_002078_430--Hb_000714_020 Hb_002078_430--Hb_000038_130 Hb_002078_430--Hb_011609_030 Hb_004232_010 Hb_004232_010 Hb_002078_430--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_002078_430--Hb_005741_020 Hb_003636_090 Hb_003636_090 Hb_002078_430--Hb_003636_090 Hb_011609_030--Hb_000714_020 Hb_011609_030--Hb_004232_010 Hb_001623_370 Hb_001623_370 Hb_011609_030--Hb_001623_370 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_000093_130 Hb_000093_130 Hb_074683_020--Hb_000093_130 Hb_000808_060 Hb_000808_060 Hb_074683_020--Hb_000808_060 Hb_000264_060 Hb_000264_060 Hb_074683_020--Hb_000264_060 Hb_003581_110 Hb_003581_110 Hb_074683_020--Hb_003581_110 Hb_001227_110 Hb_001227_110 Hb_074683_020--Hb_001227_110 Hb_007416_200 Hb_007416_200 Hb_074683_020--Hb_007416_200 Hb_171554_090 Hb_171554_090 Hb_003849_080--Hb_171554_090 Hb_175612_010 Hb_175612_010 Hb_003849_080--Hb_175612_010 Hb_004525_100 Hb_004525_100 Hb_003849_080--Hb_004525_100 Hb_009801_010 Hb_009801_010 Hb_003849_080--Hb_009801_010 Hb_004241_040 Hb_004241_040 Hb_003849_080--Hb_004241_040 Hb_006261_040 Hb_006261_040 Hb_003849_080--Hb_006261_040 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_000038_130--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92551 0.891915 0.682256 0.664402 3.01304 4.29219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78289 2.06048 0.430795 0.101557 0

CAGE analysis