Hb_001568_010

Information

Type -
Description -
Location Contig1568: 7752-10900
Sequence    

Annotation

kegg
ID rcu:RCOM_0726270
description hypothetical protein
nr
ID XP_002524909.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFZ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0726270 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001568_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006846_030 0.0786184322 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_003847_050 0.0877261476 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
4 Hb_004282_010 0.0899475348 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
5 Hb_008727_040 0.0909403767 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012787_050 0.0920193832 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
7 Hb_000014_080 0.0934014652 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
8 Hb_023956_010 0.0964883708 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_002333_010 0.0993076297 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
10 Hb_000318_060 0.1017155268 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001040_200 0.1088907081 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_000112_050 0.1092638148 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
13 Hb_002448_020 0.1106018792 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_006501_100 0.1108769163 - - malic enzyme, putative [Ricinus communis]
15 Hb_019026_050 0.1206351092 - - conserved hypothetical protein [Ricinus communis]
16 Hb_085315_010 0.125481515 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
17 Hb_000956_070 0.1258597829 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
18 Hb_002003_010 0.1259008177 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
19 Hb_006277_030 0.126290242 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003913_060 0.1263588757 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001568_010 Hb_001568_010 Hb_006846_030 Hb_006846_030 Hb_001568_010--Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_001568_010--Hb_003847_050 Hb_004282_010 Hb_004282_010 Hb_001568_010--Hb_004282_010 Hb_008727_040 Hb_008727_040 Hb_001568_010--Hb_008727_040 Hb_012787_050 Hb_012787_050 Hb_001568_010--Hb_012787_050 Hb_000014_080 Hb_000014_080 Hb_001568_010--Hb_000014_080 Hb_006846_030--Hb_003847_050 Hb_006846_030--Hb_012787_050 Hb_023956_010 Hb_023956_010 Hb_006846_030--Hb_023956_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050 Hb_003847_050--Hb_023956_010 Hb_003847_050--Hb_012787_050 Hb_003847_050--Hb_019026_050 Hb_003847_050--Hb_002448_020 Hb_000956_070 Hb_000956_070 Hb_004282_010--Hb_000956_070 Hb_006501_100 Hb_006501_100 Hb_004282_010--Hb_006501_100 Hb_004282_010--Hb_000014_080 Hb_004282_010--Hb_008727_040 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_008727_040--Hb_012787_050 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_008727_040--Hb_000956_070 Hb_008727_040--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_000014_080--Hb_000956_070 Hb_005731_070 Hb_005731_070 Hb_000014_080--Hb_005731_070 Hb_000014_080--Hb_006501_100 Hb_007386_030 Hb_007386_030 Hb_000014_080--Hb_007386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0556 0.0806546 0.236603 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.256224 0.0770208

CAGE analysis