Hb_001568_100

Information

Type -
Description -
Location Contig1568: 97451-100344
Sequence    

Annotation

kegg
ID sot:102596431
description receptor-like protein kinase HERK 1-like
nr
ID KGN63134.1
description hypothetical protein Csa_2G404850 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0LQ35
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable serine threonine-protein kinase at1g18390 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001568_100 0.0 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
2 Hb_001740_010 0.001190173 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
3 Hb_006124_020 0.00128398 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
4 Hb_001621_080 0.0016937897 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
5 Hb_002985_020 0.0017699406 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_000036_020 0.001799645 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_013405_120 0.0020472137 - - -
8 Hb_007313_020 0.0024118251 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_003894_130 0.0024487296 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_004332_060 0.0026460623 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002400_120 0.0030751832 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_000391_030 0.0031697283 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_000050_230 0.0032030281 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002285_010 0.0032131812 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001611_030 0.0033744247 - - -
16 Hb_027556_030 0.0039101161 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
17 Hb_051719_020 0.0048767003 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
18 Hb_140406_010 0.005773098 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
19 Hb_012120_010 0.0059977701 - - -
20 Hb_001476_010 0.0064882883 - - hypothetical protein JCGZ_15669 [Jatropha curcas]

Gene co-expression network

sample Hb_001568_100 Hb_001568_100 Hb_001740_010 Hb_001740_010 Hb_001568_100--Hb_001740_010 Hb_006124_020 Hb_006124_020 Hb_001568_100--Hb_006124_020 Hb_001621_080 Hb_001621_080 Hb_001568_100--Hb_001621_080 Hb_002985_020 Hb_002985_020 Hb_001568_100--Hb_002985_020 Hb_000036_020 Hb_000036_020 Hb_001568_100--Hb_000036_020 Hb_013405_120 Hb_013405_120 Hb_001568_100--Hb_013405_120 Hb_001740_010--Hb_001621_080 Hb_001740_010--Hb_013405_120 Hb_003894_130 Hb_003894_130 Hb_001740_010--Hb_003894_130 Hb_002400_120 Hb_002400_120 Hb_001740_010--Hb_002400_120 Hb_001611_030 Hb_001611_030 Hb_001740_010--Hb_001611_030 Hb_006124_020--Hb_002985_020 Hb_006124_020--Hb_000036_020 Hb_007313_020 Hb_007313_020 Hb_006124_020--Hb_007313_020 Hb_004332_060 Hb_004332_060 Hb_006124_020--Hb_004332_060 Hb_000391_030 Hb_000391_030 Hb_006124_020--Hb_000391_030 Hb_001621_080--Hb_013405_120 Hb_001621_080--Hb_003894_130 Hb_001621_080--Hb_002400_120 Hb_001621_080--Hb_001611_030 Hb_002985_020--Hb_000036_020 Hb_002985_020--Hb_007313_020 Hb_002985_020--Hb_004332_060 Hb_002985_020--Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_002985_020--Hb_000050_230 Hb_000036_020--Hb_007313_020 Hb_000036_020--Hb_004332_060 Hb_000036_020--Hb_000391_030 Hb_000036_020--Hb_000050_230 Hb_013405_120--Hb_003894_130 Hb_013405_120--Hb_002400_120 Hb_013405_120--Hb_001611_030 Hb_027556_030 Hb_027556_030 Hb_013405_120--Hb_027556_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0225246 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0196417 0

CAGE analysis