Hb_001570_030

Information

Type -
Description -
Location Contig1570: 34898-35499
Sequence    

Annotation

kegg
ID tcc:TCM_031963
description hypothetical protein
nr
ID KDP46039.1
description hypothetical protein JCGZ_13485 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13485 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001570_030 0.0 - - hypothetical protein JCGZ_13485 [Jatropha curcas]
2 Hb_002276_110 0.0884401572 - - protein binding protein, putative [Ricinus communis]
3 Hb_059280_010 0.088836062 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
4 Hb_007219_010 0.0901944683 - - -
5 Hb_004567_080 0.0902346858 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
6 Hb_004643_030 0.0902490939 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007645_010 0.0916143218 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]
8 Hb_177343_020 0.0919435544 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
9 Hb_007741_060 0.0969827472 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
10 Hb_035265_020 0.0974243809 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000627_060 0.0978748941 - - -
12 Hb_000574_080 0.1020275419 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_000648_090 0.1025489493 - - -
14 Hb_006435_020 0.1026830222 - - sugar transporter, putative [Ricinus communis]
15 Hb_002093_010 0.1034863266 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
16 Hb_002704_090 0.1057245939 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001627_070 0.1067743441 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
18 Hb_002421_170 0.1073319786 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
19 Hb_004161_040 0.1102915617 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
20 Hb_012184_020 0.1151874996 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001570_030 Hb_001570_030 Hb_002276_110 Hb_002276_110 Hb_001570_030--Hb_002276_110 Hb_059280_010 Hb_059280_010 Hb_001570_030--Hb_059280_010 Hb_007219_010 Hb_007219_010 Hb_001570_030--Hb_007219_010 Hb_004567_080 Hb_004567_080 Hb_001570_030--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_001570_030--Hb_004643_030 Hb_007645_010 Hb_007645_010 Hb_001570_030--Hb_007645_010 Hb_002276_110--Hb_059280_010 Hb_002276_110--Hb_007219_010 Hb_002276_110--Hb_004567_080 Hb_002276_110--Hb_004643_030 Hb_177343_020 Hb_177343_020 Hb_002276_110--Hb_177343_020 Hb_000574_080 Hb_000574_080 Hb_002276_110--Hb_000574_080 Hb_059280_010--Hb_007219_010 Hb_059280_010--Hb_004567_080 Hb_059280_010--Hb_004643_030 Hb_059280_010--Hb_000574_080 Hb_059280_010--Hb_177343_020 Hb_007219_010--Hb_000574_080 Hb_001627_070 Hb_001627_070 Hb_007219_010--Hb_001627_070 Hb_007219_010--Hb_004567_080 Hb_007219_010--Hb_004643_030 Hb_004567_080--Hb_004643_030 Hb_004567_080--Hb_177343_020 Hb_035265_020 Hb_035265_020 Hb_004567_080--Hb_035265_020 Hb_000648_090 Hb_000648_090 Hb_004567_080--Hb_000648_090 Hb_007741_060 Hb_007741_060 Hb_004567_080--Hb_007741_060 Hb_004643_030--Hb_177343_020 Hb_004643_030--Hb_035265_020 Hb_004643_030--Hb_000648_090 Hb_004643_030--Hb_007741_060 Hb_002835_420 Hb_002835_420 Hb_007645_010--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_007645_010--Hb_106850_010 Hb_000938_050 Hb_000938_050 Hb_007645_010--Hb_000938_050 Hb_154980_010 Hb_154980_010 Hb_007645_010--Hb_154980_010 Hb_006302_050 Hb_006302_050 Hb_007645_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_007645_010--Hb_104509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.335664 0 0.0938723 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.69566

CAGE analysis