Hb_001571_010

Information

Type -
Description -
Location Contig1571: 4818-15912
Sequence    

Annotation

kegg
ID vvi:100261069
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID KDP41372.1
description hypothetical protein JCGZ_15779 [Jatropha curcas]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_010 0.0 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
2 Hb_010839_070 0.0647303775 - - uncharacterized protein LOC100810725 [Glycine max]
3 Hb_071381_010 0.0715872623 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
4 Hb_117464_010 0.100570806 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
5 Hb_008160_020 0.1022865982 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
6 Hb_000640_270 0.1102067574 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
7 Hb_003121_020 0.1116730654 - - secretory peroxidase PX3 [Manihot esculenta]
8 Hb_000317_210 0.1126678928 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
9 Hb_004217_010 0.1247569262 - - putative wall-associated kinase family protein [Populus trichocarpa]
10 Hb_000327_300 0.1260863488 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
11 Hb_000405_040 0.1269058498 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_001081_020 0.1344541798 - - Cytochrome P450 76C2 [Triticum urartu]
13 Hb_042664_010 0.1410339444 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
14 Hb_039342_030 0.1411625058 - - conserved hypothetical protein [Ricinus communis]
15 Hb_084495_010 0.1454541365 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
16 Hb_004586_080 0.1458650996 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
17 Hb_000155_140 0.1492643636 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_000038_090 0.1500520682 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
19 Hb_006196_020 0.1517789452 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
20 Hb_003891_060 0.1519249951 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]

Gene co-expression network

sample Hb_001571_010 Hb_001571_010 Hb_010839_070 Hb_010839_070 Hb_001571_010--Hb_010839_070 Hb_071381_010 Hb_071381_010 Hb_001571_010--Hb_071381_010 Hb_117464_010 Hb_117464_010 Hb_001571_010--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_001571_010--Hb_008160_020 Hb_000640_270 Hb_000640_270 Hb_001571_010--Hb_000640_270 Hb_003121_020 Hb_003121_020 Hb_001571_010--Hb_003121_020 Hb_010839_070--Hb_000640_270 Hb_010839_070--Hb_117464_010 Hb_010839_070--Hb_008160_020 Hb_010839_070--Hb_071381_010 Hb_001081_020 Hb_001081_020 Hb_010839_070--Hb_001081_020 Hb_071381_010--Hb_008160_020 Hb_071381_010--Hb_117464_010 Hb_071381_010--Hb_001081_020 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_117464_010--Hb_008160_020 Hb_117464_010--Hb_000640_270 Hb_117464_010--Hb_001081_020 Hb_039342_030 Hb_039342_030 Hb_117464_010--Hb_039342_030 Hb_008160_020--Hb_001081_020 Hb_008160_020--Hb_000640_270 Hb_008160_020--Hb_039342_030 Hb_000640_270--Hb_001081_020 Hb_000640_270--Hb_071381_010 Hb_000640_270--Hb_039342_030 Hb_084495_010 Hb_084495_010 Hb_003121_020--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_003121_020--Hb_099198_010 Hb_014113_010 Hb_014113_010 Hb_003121_020--Hb_014113_010 Hb_003121_020--Hb_010839_070 Hb_003121_020--Hb_000640_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00549467 0.00520265 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0614353 0

CAGE analysis