Hb_001571_020

Information

Type -
Description -
Location Contig1571: 16347-16847
Sequence    

Annotation

kegg
ID cit:102630241
description probable LRR receptor-like serine/threonine-protein kinase At4g08850-like
nr
ID XP_006477934.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
swissprot
ID C0LGF4
description LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1
trembl
ID V4TPM4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024240mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
2 Hb_008144_010 0.0964031793 - - hypothetical protein VITISV_015004 [Vitis vinifera]
3 Hb_001288_050 0.1141889342 - - -
4 Hb_001597_090 0.1355886726 - - -
5 Hb_001005_040 0.141949536 - - -
6 Hb_000465_180 0.1422223882 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
7 Hb_009230_020 0.1473559162 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_000137_060 0.1479257077 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
9 Hb_001519_240 0.1556218951 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_007676_060 0.1573729136 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
11 Hb_002016_130 0.1602670306 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
12 Hb_009848_060 0.1638970221 - - unknown [Glycine max]
13 Hb_029727_010 0.1646106117 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_135554_010 0.170590922 - - Insulin-degrading enzyme, putative [Ricinus communis]
15 Hb_000574_030 0.1760638638 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000567_150 0.1760691976 - - cysteine protease, putative [Ricinus communis]
17 Hb_004487_060 0.1805411386 - - cytochrome P450, putative [Ricinus communis]
18 Hb_007382_070 0.1811577062 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
19 Hb_000169_100 0.184784629 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
20 Hb_030885_010 0.1859793589 - - -

Gene co-expression network

sample Hb_001571_020 Hb_001571_020 Hb_008144_010 Hb_008144_010 Hb_001571_020--Hb_008144_010 Hb_001288_050 Hb_001288_050 Hb_001571_020--Hb_001288_050 Hb_001597_090 Hb_001597_090 Hb_001571_020--Hb_001597_090 Hb_001005_040 Hb_001005_040 Hb_001571_020--Hb_001005_040 Hb_000465_180 Hb_000465_180 Hb_001571_020--Hb_000465_180 Hb_009230_020 Hb_009230_020 Hb_001571_020--Hb_009230_020 Hb_008144_010--Hb_009230_020 Hb_072173_010 Hb_072173_010 Hb_008144_010--Hb_072173_010 Hb_131320_010 Hb_131320_010 Hb_008144_010--Hb_131320_010 Hb_110782_010 Hb_110782_010 Hb_008144_010--Hb_110782_010 Hb_009848_060 Hb_009848_060 Hb_008144_010--Hb_009848_060 Hb_000567_150 Hb_000567_150 Hb_001288_050--Hb_000567_150 Hb_001288_050--Hb_001005_040 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001288_050--Hb_001597_090 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130 Hb_007676_060 Hb_007676_060 Hb_001597_090--Hb_007676_060 Hb_146930_010 Hb_146930_010 Hb_001597_090--Hb_146930_010 Hb_000751_050 Hb_000751_050 Hb_001597_090--Hb_000751_050 Hb_001597_090--Hb_000751_070 Hb_001005_040--Hb_002016_130 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_000137_060 Hb_000137_060 Hb_000465_180--Hb_000137_060 Hb_000457_130 Hb_000457_130 Hb_000465_180--Hb_000457_130 Hb_007382_070 Hb_007382_070 Hb_000465_180--Hb_007382_070 Hb_135554_010 Hb_135554_010 Hb_000465_180--Hb_135554_010 Hb_001519_240 Hb_001519_240 Hb_000465_180--Hb_001519_240 Hb_000465_180--Hb_001288_050 Hb_009230_020--Hb_001519_240 Hb_002122_050 Hb_002122_050 Hb_009230_020--Hb_002122_050 Hb_009230_020--Hb_007676_060 Hb_009230_020--Hb_000137_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108877 0.104464 0.0768657 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.87719 0.859092

CAGE analysis