Hb_001571_040

Information

Type -
Description -
Location Contig1571: 43464-47197
Sequence    

Annotation

kegg
ID egr:104419911
description uncharacterized LOC104419911
nr
ID XP_012084604.1
description PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13710: 43526-47114 , PASA_asmbl_13711: 45058-45382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_040 0.0 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
2 Hb_000300_060 0.062312954 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
3 Hb_001790_020 0.063910563 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
4 Hb_000032_570 0.0656392855 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
5 Hb_006332_020 0.0680199271 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_066182_010 0.0685235343 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
7 Hb_012634_010 0.0685879654 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
8 Hb_015746_010 0.0699333992 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
9 Hb_007218_080 0.0733780132 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
10 Hb_000321_070 0.074472322 - - protein with unknown function [Ricinus communis]
11 Hb_000853_170 0.0753496694 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
12 Hb_001259_090 0.0764784496 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
13 Hb_001377_290 0.0764813783 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
14 Hb_018838_030 0.0769231394 - - conserved hypothetical protein [Ricinus communis]
15 Hb_063090_010 0.0772123476 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
16 Hb_000923_020 0.077213543 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_002043_190 0.0777016136 - - rwd domain-containing protein, putative [Ricinus communis]
18 Hb_002030_030 0.079222916 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
19 Hb_000720_120 0.0797266343 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_001138_050 0.0803016695 - - hypothetical protein JCGZ_15696 [Jatropha curcas]

Gene co-expression network

sample Hb_001571_040 Hb_001571_040 Hb_000300_060 Hb_000300_060 Hb_001571_040--Hb_000300_060 Hb_001790_020 Hb_001790_020 Hb_001571_040--Hb_001790_020 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_066182_010 Hb_066182_010 Hb_001571_040--Hb_066182_010 Hb_012634_010 Hb_012634_010 Hb_001571_040--Hb_012634_010 Hb_000300_060--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_000300_060--Hb_005276_210 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_001790_020--Hb_012634_010 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_006332_020--Hb_028872_140 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_066182_010--Hb_005276_210 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_002027_260 Hb_002027_260 Hb_012634_010--Hb_002027_260 Hb_006400_040 Hb_006400_040 Hb_012634_010--Hb_006400_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3063 17.6493 9.34322 12.2732 35.071 34.8655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.86 35.1619 23.9538 22.2314 11.0198

CAGE analysis