Hb_001571_050

Information

Type -
Description -
Location Contig1571: 50272-58866
Sequence    

Annotation

kegg
ID tcc:TCM_034937
description Endoplasmic reticulum vesicle transporter protein isoform 1
nr
ID XP_011012659.1
description PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
swissprot
ID Q803I2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
trembl
ID A0A061FG49
description Endoplasmic reticulum vesicle transporter protein isoform 1 OS=Theobroma cacao GN=TCM_034937 PE=4 SV=1
Gene Ontology
ID GO:0005774
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13712: 50494-52952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_050 0.0 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
2 Hb_002965_090 0.0672122517 - - importin alpha, putative [Ricinus communis]
3 Hb_002110_190 0.0682972357 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
4 Hb_011674_020 0.0714157465 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
5 Hb_000078_120 0.0721845082 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
6 Hb_004109_310 0.0767094731 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
7 Hb_000429_150 0.0777916135 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
8 Hb_001500_140 0.0783315336 - - pelota, putative [Ricinus communis]
9 Hb_000111_320 0.0794922025 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
10 Hb_002000_080 0.0799369462 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
11 Hb_004567_090 0.0800111511 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
12 Hb_007638_030 0.0803475826 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
13 Hb_003294_070 0.0805879603 - - hypothetical protein RCOM_1714550 [Ricinus communis]
14 Hb_000665_060 0.08087254 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
15 Hb_002414_050 0.0811264362 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
16 Hb_000181_400 0.0819355281 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
17 Hb_006831_140 0.0844844544 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000053_040 0.0847420154 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
19 Hb_000174_180 0.0853911717 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000392_430 0.0860020926 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]

Gene co-expression network

sample Hb_001571_050 Hb_001571_050 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_056691_060 Hb_056691_060 Hb_002965_090--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_002965_090--Hb_000053_040 Hb_001247_310 Hb_001247_310 Hb_002965_090--Hb_001247_310 Hb_007380_060 Hb_007380_060 Hb_002965_090--Hb_007380_060 Hb_000254_090 Hb_000254_090 Hb_002965_090--Hb_000254_090 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_013726_090 Hb_013726_090 Hb_011674_020--Hb_013726_090 Hb_011674_020--Hb_007380_060 Hb_000111_320 Hb_000111_320 Hb_011674_020--Hb_000111_320 Hb_001876_050 Hb_001876_050 Hb_011674_020--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_011674_020--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_000078_120--Hb_006831_140 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_000078_120--Hb_000696_330 Hb_002078_350 Hb_002078_350 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_006913_010 Hb_006913_010 Hb_004109_310--Hb_006913_010 Hb_007017_030 Hb_007017_030 Hb_004109_310--Hb_007017_030 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000140_280 Hb_000140_280 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.99547 4.63951 2.99808 7.50566 4.04869 7.23918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.16686 6.06565 4.74355 8.15777 6.49977

CAGE analysis