Hb_001571_070

Information

Type -
Description -
Location Contig1571: 78610-81087
Sequence    

Annotation

kegg
ID tcc:TCM_007509
description Leucine-rich repeat protein kinase family protein, putative
nr
ID XP_012084623.1
description PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
swissprot
ID O48788
description Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1
trembl
ID A0A061E1I7
description Leucine-rich repeat protein kinase family protein, putative OS=Theobroma cacao GN=TCM_007509 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable inactive receptor kinase at2g26730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_070 0.0 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
2 Hb_002391_260 0.0008363261 - - hypothetical protein RCOM_0017280 [Ricinus communis]
3 Hb_001817_200 0.0027158729 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
4 Hb_000413_090 0.0031808993 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
5 Hb_001322_060 0.0095613041 - - unnamed protein product [Vitis vinifera]
6 Hb_000003_800 0.0095788669 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002259_100 0.0097257423 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
8 Hb_137288_010 0.0105308347 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
9 Hb_003266_110 0.0114601234 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001948_060 0.014282641 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
11 Hb_004645_060 0.0146439099 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
12 Hb_020479_010 0.0155233276 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
13 Hb_187418_010 0.0179721326 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
14 Hb_001504_200 0.0226292112 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
15 Hb_004712_120 0.0249590375 - - Pectinesterase U1 precursor, putative [Ricinus communis]
16 Hb_003549_110 0.0251511212 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
17 Hb_009323_010 0.0260549162 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
18 Hb_007552_030 0.0293948468 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_001728_090 0.0330875536 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
20 Hb_004126_020 0.0342091139 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]

Gene co-expression network

sample Hb_001571_070 Hb_001571_070 Hb_002391_260 Hb_002391_260 Hb_001571_070--Hb_002391_260 Hb_001817_200 Hb_001817_200 Hb_001571_070--Hb_001817_200 Hb_000413_090 Hb_000413_090 Hb_001571_070--Hb_000413_090 Hb_001322_060 Hb_001322_060 Hb_001571_070--Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_001571_070--Hb_000003_800 Hb_002259_100 Hb_002259_100 Hb_001571_070--Hb_002259_100 Hb_002391_260--Hb_001817_200 Hb_002391_260--Hb_000413_090 Hb_002391_260--Hb_002259_100 Hb_002391_260--Hb_001322_060 Hb_002391_260--Hb_000003_800 Hb_001817_200--Hb_000413_090 Hb_001817_200--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_001817_200--Hb_004645_060 Hb_001817_200--Hb_001322_060 Hb_000413_090--Hb_001322_060 Hb_000413_090--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_000413_090--Hb_137288_010 Hb_001322_060--Hb_000003_800 Hb_001322_060--Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_001322_060--Hb_003266_110 Hb_001948_060 Hb_001948_060 Hb_001322_060--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001322_060--Hb_020479_010 Hb_000003_800--Hb_137288_010 Hb_000003_800--Hb_003266_110 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010 Hb_002259_100--Hb_004645_060 Hb_002259_100--Hb_000413_090 Hb_009323_010 Hb_009323_010 Hb_002259_100--Hb_009323_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.179968 0.0753207 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis