Hb_001571_090

Information

Type -
Description -
Location Contig1571: 106145-108251
Sequence    

Annotation

kegg
ID tcc:TCM_042984
description Ribosomal L29 family protein
nr
ID XP_012073343.1
description PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
swissprot
ID Q9M5L0
description 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
trembl
ID A0A067LFS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06629 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13718: 106140-108241 , PASA_asmbl_13720: 92463-110071
cDNA
(Sanger)
(ID:Location)		 046_O23.ab1: 106195-108241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_090 0.0 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
2 Hb_003226_220 0.0990691152 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
3 Hb_000661_240 0.1110718977 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
4 Hb_007290_080 0.1149957627 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
5 Hb_009554_010 0.1197349867 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
6 Hb_026398_010 0.1199879057 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
7 Hb_001769_100 0.1205668966 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
8 Hb_005357_130 0.1215448195 - - hypothetical protein L484_012905 [Morus notabilis]
9 Hb_002660_030 0.1228534844 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001575_030 0.1246024414 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
11 Hb_000997_120 0.1254743336 - - 40S ribosomal protein S15E [Hevea brasiliensis]
12 Hb_012395_130 0.1254926533 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_000329_020 0.1256682175 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
14 Hb_000134_070 0.126493355 - - 60S ribosomal protein L6, putative [Ricinus communis]
15 Hb_000505_140 0.1270647447 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
16 Hb_007120_090 0.1284374101 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
17 Hb_002897_080 0.1289181327 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_003549_020 0.129099246 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009384_020 0.1295059837 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
20 Hb_002716_090 0.1297713703 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001571_090 Hb_001571_090 Hb_003226_220 Hb_003226_220 Hb_001571_090--Hb_003226_220 Hb_000661_240 Hb_000661_240 Hb_001571_090--Hb_000661_240 Hb_007290_080 Hb_007290_080 Hb_001571_090--Hb_007290_080 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_026398_010 Hb_026398_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_004005_010 Hb_004005_010 Hb_000661_240--Hb_004005_010 Hb_172221_010 Hb_172221_010 Hb_000661_240--Hb_172221_010 Hb_000329_020 Hb_000329_020 Hb_000661_240--Hb_000329_020 Hb_000661_240--Hb_026398_010 Hb_002835_320 Hb_002835_320 Hb_000661_240--Hb_002835_320 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_148909_020 Hb_148909_020 Hb_007290_080--Hb_148909_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_001638_260 Hb_001638_260 Hb_009554_010--Hb_001638_260 Hb_009793_010 Hb_009793_010 Hb_009554_010--Hb_009793_010 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_000419_130 Hb_000419_130 Hb_001769_100--Hb_000419_130 Hb_000645_190 Hb_000645_190 Hb_001769_100--Hb_000645_190 Hb_012265_010 Hb_012265_010 Hb_001769_100--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001769_100--Hb_003623_050 Hb_011161_050 Hb_011161_050 Hb_001769_100--Hb_011161_050 Hb_001950_120 Hb_001950_120 Hb_001769_100--Hb_001950_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.6323 19.4816 66.1638 121.145 117.197 215.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
306.195 599.917 86.2675 137.248 47.7062

CAGE analysis