Hb_001571_100

Information

Type -
Description -
Location Contig1571: 124832-126076
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21740g
description POPTRDRAFT_709712; chlorophyll A-B binding family protein
nr
ID XP_002298178.1
description chlorophyll A-B binding family protein [Populus trichocarpa]
swissprot
ID P27524
description Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1
trembl
ID A9PFP4
description Chlorophyll A-B binding family protein OS=Populus trichocarpa GN=POPTR_0001s21740g PE=2 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein cp24 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13723: 124705-126061
cDNA
(Sanger)
(ID:Location)		 003_P16.ab1: 124776-125826 , 023_G24.ab1: 124797-125779 , 047_I17.ab1: 124797-125822 , 047_K01.ab1: 124776-125809 , 052_L22.ab1: 124797-125734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_100 0.0 - - chlorophyll A-B binding family protein [Populus trichocarpa]
2 Hb_002743_010 0.0392095147 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002028_020 0.04484509 - - acyltransferase, putative [Ricinus communis]
4 Hb_005345_020 0.0457194005 - - Root phototropism protein, putative [Ricinus communis]
5 Hb_000333_010 0.0479591225 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
6 Hb_041433_010 0.0480202789 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_000557_070 0.0484536424 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
8 Hb_000719_030 0.0512436505 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
9 Hb_000915_210 0.0532810263 - - conserved hypothetical protein [Ricinus communis]
10 Hb_149644_030 0.0567198247 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
11 Hb_014056_020 0.0569374589 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000512_120 0.057357143 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
13 Hb_001135_310 0.0579946965 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
14 Hb_146225_020 0.058479011 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_006117_030 0.0594623578 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001675_090 0.0600034359 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
17 Hb_001488_230 0.0604436906 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
18 Hb_004724_090 0.0630619934 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
19 Hb_009588_010 0.0642240236 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
20 Hb_000731_150 0.0649596243 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001571_100 Hb_001571_100 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_014056_020 Hb_014056_020 Hb_002743_010--Hb_014056_020 Hb_000915_210 Hb_000915_210 Hb_002743_010--Hb_000915_210 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120 Hb_000731_150 Hb_000731_150 Hb_002743_010--Hb_000731_150 Hb_001488_230 Hb_001488_230 Hb_002028_020--Hb_001488_230 Hb_009588_010 Hb_009588_010 Hb_002028_020--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_002028_020--Hb_000418_130 Hb_000042_280 Hb_000042_280 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030 Hb_009476_030 Hb_009476_030 Hb_005345_020--Hb_009476_030 Hb_001675_090 Hb_001675_090 Hb_005345_020--Hb_001675_090 Hb_005345_020--Hb_041433_010 Hb_001975_120 Hb_001975_120 Hb_005345_020--Hb_001975_120 Hb_001789_220 Hb_001789_220 Hb_005345_020--Hb_001789_220 Hb_000333_010--Hb_000512_120 Hb_000333_010--Hb_002743_010 Hb_000333_010--Hb_014056_020 Hb_000333_010--Hb_000557_070 Hb_000333_010--Hb_000731_150 Hb_041433_010--Hb_001789_220 Hb_041433_010--Hb_009476_030 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_006117_030 Hb_006117_030 Hb_000557_070--Hb_006117_030 Hb_004993_020 Hb_004993_020 Hb_000557_070--Hb_004993_020 Hb_068580_010 Hb_068580_010 Hb_000557_070--Hb_068580_010 Hb_000557_070--Hb_000731_150 Hb_000557_070--Hb_002743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.12016 297.742 138.802 0 0.0243694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1011 0.0397577 0 1.34296 319.365

CAGE analysis