Hb_001575_020

Information

Type -
Description -
Location Contig1575: 25450-33796
Sequence    

Annotation

kegg
ID rcu:RCOM_0440850
description hypothetical protein
nr
ID XP_002527716.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CY21
description Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=2 SV=1
trembl
ID B9SNZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0440850 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable 18s rrna (guanine-n )-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13741: 25366-33804
cDNA
(Sanger)
(ID:Location)		 005_H04.ab1: 26205-33804 , 045_D03.ab1: 29356-33804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001616_060 0.0645268858 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
3 Hb_003929_120 0.0675944443 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
4 Hb_002097_060 0.0682936354 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000069_100 0.0807375136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000061_300 0.081667154 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
7 Hb_001160_030 0.0835527395 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
8 Hb_007382_150 0.0845778936 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
9 Hb_002876_120 0.0855573458 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
10 Hb_003579_030 0.0913631953 - - phosphatase 2C family protein [Populus trichocarpa]
11 Hb_003938_180 0.0932438906 - - lesion inducing family protein [Populus trichocarpa]
12 Hb_003376_030 0.0962692329 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
13 Hb_000046_290 0.0981290426 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
14 Hb_001862_100 0.0989634897 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
15 Hb_002471_080 0.0996245597 - - oxidoreductase, putative [Ricinus communis]
16 Hb_003994_040 0.1014233449 - - -
17 Hb_148200_010 0.1019448644 - - hypothetical protein 33 [Hevea brasiliensis]
18 Hb_002078_460 0.1033372091 - - -
19 Hb_003455_040 0.1035188964 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
20 Hb_017948_010 0.1047039784 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001575_020 Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_003929_120--Hb_000069_100 Hb_003929_120--Hb_001616_060 Hb_003929_120--Hb_007382_150 Hb_003938_180 Hb_003938_180 Hb_003929_120--Hb_003938_180 Hb_000224_090 Hb_000224_090 Hb_003929_120--Hb_000224_090 Hb_003376_030 Hb_003376_030 Hb_002097_060--Hb_003376_030 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_001160_030--Hb_003376_030 Hb_001160_030--Hb_002097_060 Hb_001160_030--Hb_001616_060 Hb_000146_020 Hb_000146_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5847 4.40053 4.71063 4.88315 7.90834 16.4737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0888 44.7321 42.8845 10.7606 9.52864

CAGE analysis