Hb_001575_060

Information

Type -
Description -
Location Contig1575: 110026-126706
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09570g
description POPTRDRAFT_835899; UbiE/COQ5 methyltransferase family protein
nr
ID XP_012069346.1
description PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LVC8
description 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Arabidopsis thaliana GN=COQ5 PE=2 SV=1
trembl
ID A0A067KW81
description 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Jatropha curcas GN=COQ5 PE=3 SV=1
Gene Ontology
ID GO:0008168
description 2-methoxy-6-polyprenyl- -benzoquinol mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13749: 109972-121876 , PASA_asmbl_13751: 124519-126687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_060 0.0 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
2 Hb_003050_250 0.080244693 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
3 Hb_000403_070 0.0826091552 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001728_060 0.0857197446 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
5 Hb_001240_010 0.0886071595 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
6 Hb_000107_150 0.0954121279 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_001892_070 0.0956421068 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
8 Hb_003622_030 0.0960204366 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
9 Hb_000120_770 0.1026223594 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002609_200 0.1035981111 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_011457_050 0.1066532972 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
12 Hb_002876_020 0.1066696127 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
13 Hb_004257_010 0.1067083768 - - CMP-sialic acid transporter, putative [Ricinus communis]
14 Hb_012799_170 0.1075235223 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
15 Hb_002872_050 0.1076950706 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
16 Hb_019113_020 0.1087058682 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
17 Hb_000056_070 0.1096170985 - - -
18 Hb_003106_100 0.110749161 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
19 Hb_006846_150 0.1140745412 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001329_150 0.1143968335 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]

Gene co-expression network

sample Hb_001575_060 Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001575_060--Hb_003050_250 Hb_000403_070 Hb_000403_070 Hb_001575_060--Hb_000403_070 Hb_001728_060 Hb_001728_060 Hb_001575_060--Hb_001728_060 Hb_001240_010 Hb_001240_010 Hb_001575_060--Hb_001240_010 Hb_000107_150 Hb_000107_150 Hb_001575_060--Hb_000107_150 Hb_001892_070 Hb_001892_070 Hb_001575_060--Hb_001892_070 Hb_019113_020 Hb_019113_020 Hb_003050_250--Hb_019113_020 Hb_004125_040 Hb_004125_040 Hb_003050_250--Hb_004125_040 Hb_003050_250--Hb_001240_010 Hb_003050_250--Hb_001728_060 Hb_003050_250--Hb_000403_070 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_000159_130 Hb_000159_130 Hb_001728_060--Hb_000159_130 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_001240_010--Hb_000107_150 Hb_001240_010--Hb_140627_010 Hb_001240_010--Hb_011457_050 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_001892_070--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32759 0.907653 5.91714 7.31066 2.91189 3.30431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09379 12.9299 7.92391 4.53444 9.92591

CAGE analysis