Hb_001578_020

Information

Type -
Description -
Location Contig1578: 24164-32902
Sequence    

Annotation

kegg
ID rcu:RCOM_0729440
description Protein virR, putative
nr
ID XP_002531745.1
description Protein virR, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0H6
description Protein virR, putative OS=Ricinus communis GN=RCOM_0729440 PE=4 SV=1
Gene Ontology
ID GO:0016829
description nef-associated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13802: 24172-24380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001578_020 0.0 - - Protein virR, putative [Ricinus communis]
2 Hb_004440_060 0.0736252963 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_004644_030 0.0776624038 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
4 Hb_055619_010 0.0842114509 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
5 Hb_007534_050 0.0899014621 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_008147_080 0.09216562 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
7 Hb_002811_010 0.0963556742 - - cysteine synthase, putative [Ricinus communis]
8 Hb_005127_030 0.0980399581 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_001946_390 0.1017982025 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
10 Hb_001369_790 0.1018948301 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
11 Hb_012733_040 0.1031627334 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
12 Hb_000077_150 0.1034386629 - - PREDICTED: riboflavin synthase [Jatropha curcas]
13 Hb_000364_050 0.1041407953 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
14 Hb_001789_200 0.1050084999 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
15 Hb_006059_030 0.1080492616 - - glutamate dehydrogenase, putative [Ricinus communis]
16 Hb_016219_010 0.1081425756 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
17 Hb_002392_010 0.1085835625 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
18 Hb_000317_260 0.1109729057 - - unknown [Populus trichocarpa]
19 Hb_035273_020 0.1133776389 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
20 Hb_004631_090 0.113612306 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]

Gene co-expression network

sample Hb_001578_020 Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_001578_020--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_001578_020--Hb_004644_030 Hb_055619_010 Hb_055619_010 Hb_001578_020--Hb_055619_010 Hb_007534_050 Hb_007534_050 Hb_001578_020--Hb_007534_050 Hb_008147_080 Hb_008147_080 Hb_001578_020--Hb_008147_080 Hb_002811_010 Hb_002811_010 Hb_001578_020--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001369_790 Hb_001369_790 Hb_004440_060--Hb_001369_790 Hb_004440_060--Hb_007534_050 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004440_060--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_004644_030--Hb_002762_110 Hb_000077_150 Hb_000077_150 Hb_004644_030--Hb_000077_150 Hb_000622_290 Hb_000622_290 Hb_004644_030--Hb_000622_290 Hb_004644_030--Hb_008147_080 Hb_003053_110 Hb_003053_110 Hb_004644_030--Hb_003053_110 Hb_055619_010--Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_055619_010--Hb_005731_160 Hb_055619_010--Hb_007534_050 Hb_055619_010--Hb_004440_060 Hb_055619_010--Hb_004644_030 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_007534_050--Hb_002811_010 Hb_007534_050--Hb_000317_260 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_008375_010 Hb_008375_010 Hb_008147_080--Hb_008375_010 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_008147_080--Hb_000077_150 Hb_002811_010--Hb_005731_160 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_000613_110 Hb_000613_110 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_002811_010--Hb_000077_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.891243 0.80064 3.93129 3.41926 0.984374 2.20761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40868 3.0903 1.72031 3.38399 5.82984

CAGE analysis