Hb_001579_030

Information

Type -
Description -
Location Contig1579: 31827-34592
Sequence    

Annotation

kegg
ID tcc:TCM_010354
description Nucleic acid-binding, OB-fold-like protein
nr
ID XP_007044641.1
description Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
swissprot
ID O49453
description Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1
trembl
ID A0A061E750
description Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_010354 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nucleic acid- ob-fold-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13808: 31905-34924
cDNA
(Sanger)
(ID:Location)		 007_F09.ab1: 32105-34856 , 013_N24.ab1: 32030-34854 , 015_J08.ab1: 32161-34845 , 015_M05.ab1: 32082-34856 , 017_M15.ab1: 32166-34854 , 026_I12.ab1: 32160-34924 , 026_K10.ab1: 32239-34924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_030 0.0 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
2 Hb_000347_540 0.0540087733 - - protein binding protein, putative [Ricinus communis]
3 Hb_025645_010 0.0666152247 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
4 Hb_001662_070 0.0749977416 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
5 Hb_000815_320 0.0791122928 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
6 Hb_000787_050 0.0806899817 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
7 Hb_000403_060 0.0831928238 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_011344_210 0.0844425876 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
9 Hb_000094_280 0.08937678 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
10 Hb_007477_070 0.0900152595 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
11 Hb_007594_030 0.0902758875 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
12 Hb_118419_010 0.0909615166 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_032208_090 0.0921787927 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
14 Hb_003057_090 0.0940886955 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
15 Hb_004324_070 0.0970734545 - - protein phosphatase 2C [Hevea brasiliensis]
16 Hb_002685_040 0.09812362 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
17 Hb_000580_090 0.0988028925 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_003417_020 0.0989380138 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
19 Hb_000521_320 0.1001932971 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
20 Hb_013726_020 0.100480449 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_030 Hb_001579_030 Hb_000347_540 Hb_000347_540 Hb_001579_030--Hb_000347_540 Hb_025645_010 Hb_025645_010 Hb_001579_030--Hb_025645_010 Hb_001662_070 Hb_001662_070 Hb_001579_030--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001579_030--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001579_030--Hb_000787_050 Hb_000403_060 Hb_000403_060 Hb_001579_030--Hb_000403_060 Hb_000347_540--Hb_001662_070 Hb_000347_540--Hb_000815_320 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_000347_540--Hb_025645_010 Hb_025645_010--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_001662_070--Hb_000815_320 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
213.338 68.4232 157.187 166.587 174.808 121.592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
192.633 221.885 213.964 99.0727 60.1037

CAGE analysis