Hb_001579_050

Information

Type -
Description -
Location Contig1579: 36506-39099
Sequence    

Annotation

kegg
ID rcu:RCOM_0528460
description alcohol dehydrogenase, putative (EC:1.6.5.5)
nr
ID XP_002525379.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9ZUC1
description Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=2 SV=2
trembl
ID B9SHB0
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0528460 PE=4 SV=1
Gene Ontology
ID GO:0009570
description 2-methylene-furan-3-one reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13810: 36513-39058
cDNA
(Sanger)
(ID:Location)		 022_B02.ab1: 36521-36776 , 034_E21.ab1: 36513-38109

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_050 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001517_060 0.0708652258 - - phosphoribulose kinase, putative [Ricinus communis]
3 Hb_015807_020 0.071126814 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_001289_050 0.0770912134 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
5 Hb_000139_030 0.0787247899 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
6 Hb_000081_110 0.083888304 - - nitrate transporter, putative [Ricinus communis]
7 Hb_002534_090 0.0849701653 - - geranylgeranyl reductase [Hevea brasiliensis]
8 Hb_004146_030 0.0894268063 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_048755_030 0.0906915572 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_009093_020 0.0930840981 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
11 Hb_077151_010 0.0946751029 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_002289_070 0.0949522586 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
13 Hb_002111_010 0.0972063884 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_003171_040 0.0981892401 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_000858_050 0.0982580581 - - kinase, putative [Ricinus communis]
16 Hb_000483_440 0.099867474 - - conserved hypothetical protein [Ricinus communis]
17 Hb_163950_040 0.1005908214 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
18 Hb_168319_040 0.1014121936 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
19 Hb_010080_070 0.1022172713 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
20 Hb_000009_470 0.1037979835 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_050 Hb_001579_050 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_001517_060--Hb_002534_090 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_000009_470 Hb_000009_470 Hb_001517_060--Hb_000009_470 Hb_000858_050 Hb_000858_050 Hb_015807_020--Hb_000858_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_000282_100 Hb_000282_100 Hb_015807_020--Hb_000282_100 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_000282_100 Hb_001289_050--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_000139_030--Hb_000081_110 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_048755_030 Hb_048755_030 Hb_000139_030--Hb_048755_030 Hb_000483_440 Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210 Hb_002534_090--Hb_002289_070 Hb_002413_050 Hb_002413_050 Hb_002534_090--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_002534_090--Hb_000009_470 Hb_002534_090--Hb_011381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140931 13.1193 70.0201 45.6744 0.0706244 0.144992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.343386 0.202621 0.127249 15.3067 336.56

CAGE analysis