Hb_001579_060

Information

Type -
Description -
Location Contig1579: 40198-46558
Sequence    

Annotation

kegg
ID rcu:RCOM_0528440
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_002525377.1
description carbonic anhydrase, putative [Ricinus communis]
swissprot
ID P27141
description Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9SHA8
description Carbonic anhydrase OS=Ricinus communis GN=RCOM_0528440 PE=3 SV=1
Gene Ontology
ID GO:0004089
description carbonic anhydrase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13811: 40365-44568 , PASA_asmbl_13812: 40365-46573 , PASA_asmbl_13813: 40365-46510 , PASA_asmbl_13815: 43510-44609
cDNA
(Sanger)
(ID:Location)		 006_L20.ab1: 41845-46510 , 010_H02.ab1: 42334-46573 , 021_I20.ab1: 40688-44568 , 021_N06.ab1: 43510-44609 , 030_G21.ab1: 41252-44568 , 031_G07.ab1: 42311-46573 , 039_I02.ab1: 43510-44609 , 050_K03.ab1: 41845-44568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_060 0.0 - - carbonic anhydrase, putative [Ricinus communis]
2 Hb_006827_030 0.0699622034 - - oligopeptide transporter, putative [Ricinus communis]
3 Hb_000694_050 0.0702800483 - - Nuclease PA3, putative [Ricinus communis]
4 Hb_000987_020 0.0710525263 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
5 Hb_001883_010 0.0795132167 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_000680_130 0.0878519359 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_000968_010 0.0948239993 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
8 Hb_032695_010 0.0967919306 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
9 Hb_002030_090 0.1034549329 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_002155_020 0.1051772074 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
11 Hb_002615_080 0.1057555034 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
12 Hb_004946_010 0.1068904207 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
13 Hb_171168_010 0.1069699002 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_002601_140 0.1077362711 - - signal transducer, putative [Ricinus communis]
15 Hb_000037_200 0.1088573035 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000010_370 0.1091043251 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
17 Hb_000025_590 0.1119351867 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
18 Hb_007113_020 0.1159756319 - - -
19 Hb_000901_010 0.1174263427 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
20 Hb_008878_020 0.1184913532 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]

Gene co-expression network

sample Hb_001579_060 Hb_001579_060 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_000987_020 Hb_000987_020 Hb_001579_060--Hb_000987_020 Hb_001883_010 Hb_001883_010 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_006827_030--Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_000694_050--Hb_000987_020 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000185_170 Hb_000185_170 Hb_000987_020--Hb_000185_170 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_032695_010 Hb_032695_010 Hb_001883_010--Hb_032695_010 Hb_001883_010--Hb_000680_130 Hb_000025_590 Hb_000025_590 Hb_001883_010--Hb_000025_590 Hb_000373_010 Hb_000373_010 Hb_000680_130--Hb_000373_010 Hb_000705_040 Hb_000705_040 Hb_000680_130--Hb_000705_040 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_002636_070 Hb_002636_070 Hb_000680_130--Hb_002636_070 Hb_000680_130--Hb_032695_010 Hb_000270_640 Hb_000270_640 Hb_000968_010--Hb_000270_640 Hb_003141_060 Hb_003141_060 Hb_000968_010--Hb_003141_060 Hb_011104_020 Hb_011104_020 Hb_000968_010--Hb_011104_020 Hb_000968_010--Hb_000680_130 Hb_000968_010--Hb_000373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107903 27.0215 49.9362 25.4449 0.198711 0.142361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208673 0.164172 0.0882612 21.8942 69.8372

CAGE analysis