Hb_001579_140

Information

Type -
Description -
Location Contig1579: 106951-108491
Sequence    

Annotation

kegg
ID rcu:RCOM_0528110
description hypothetical protein
nr
ID XP_012085389.1
description PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZUD9
description Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1
trembl
ID A0A067K466
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17747 PE=4 SV=1
Gene Ontology
ID GO:0003950
description probable inactive poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13819: 107204-108043 , PASA_asmbl_13820: 107407-107815 , PASA_asmbl_13821: 108279-108490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_140 0.0 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
2 Hb_000792_120 0.1395927911 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
3 Hb_000613_160 0.1590789174 - - coated vesicle membrane protein, putative [Ricinus communis]
4 Hb_012239_100 0.1640015138 - - hypothetical protein VITISV_043897 [Vitis vinifera]
5 Hb_005000_160 0.1654714115 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
6 Hb_009838_040 0.1677373062 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
7 Hb_000749_240 0.1755325775 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017134_010 0.1789281713 - - HEV1.2 [Hevea brasiliensis]
9 Hb_008066_030 0.1802821542 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
10 Hb_007218_100 0.1888078061 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_000329_660 0.1896572963 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
12 Hb_000920_320 0.1907100876 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
13 Hb_003226_240 0.1909173549 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_000215_180 0.1930915707 - - hypothetical protein 17 [Hevea brasiliensis]
15 Hb_000979_250 0.1951647782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003211_050 0.1954823338 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_012022_100 0.1966737792 - - CPRD49 family protein [Populus trichocarpa]
18 Hb_002043_120 0.1992169031 - - protein with unknown function [Ricinus communis]
19 Hb_001276_060 0.1995077157 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
20 Hb_001511_140 0.1998164486 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_140 Hb_001579_140 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_000613_160 Hb_000613_160 Hb_001579_140--Hb_000613_160 Hb_012239_100 Hb_012239_100 Hb_001579_140--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_001579_140--Hb_005000_160 Hb_009838_040 Hb_009838_040 Hb_001579_140--Hb_009838_040 Hb_000749_240 Hb_000749_240 Hb_001579_140--Hb_000749_240 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000329_660 Hb_000329_660 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030 Hb_000788_080 Hb_000788_080 Hb_000613_160--Hb_000788_080 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_012239_100--Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_012239_100--Hb_000215_180 Hb_012239_100--Hb_005000_160 Hb_000432_050 Hb_000432_050 Hb_012239_100--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_012239_100--Hb_001538_140 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_000788_080 Hb_005000_160--Hb_009838_040 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_009838_040--Hb_000215_180 Hb_009838_040--Hb_000788_080 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_000749_240--Hb_009838_040 Hb_017134_010 Hb_017134_010 Hb_000749_240--Hb_017134_010 Hb_000115_050 Hb_000115_050 Hb_000749_240--Hb_000115_050 Hb_000749_240--Hb_005000_160 Hb_001158_190 Hb_001158_190 Hb_000749_240--Hb_001158_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.433095 0.503522 0.329542 0.198898 0.0936766 0.106956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.20191 6.88841 3.84389 1.43014 0

CAGE analysis