Hb_001579_160

Information

Type -
Description -
Location Contig1579: 115250-115684
Sequence    

Annotation

kegg
ID rcu:RCOM_0528080
description hypothetical protein
nr
ID XP_012085391.1
description PREDICTED: kininogen-1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17751 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13824: 116669-118623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_160 0.0 - - PREDICTED: kininogen-1-like [Jatropha curcas]
2 Hb_009421_060 0.0552301905 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
3 Hb_004158_040 0.05641512 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
4 Hb_001541_170 0.0601564978 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
5 Hb_001454_350 0.0758816593 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
6 Hb_001722_110 0.078214407 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_180088_010 0.080121085 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_004757_010 0.0811492687 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
9 Hb_027411_030 0.0822038265 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_007919_010 0.082400697 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006618_100 0.0839223058 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_005588_050 0.086916134 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001712_010 0.0878885236 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
14 Hb_092272_010 0.0927327436 - - -
15 Hb_001500_020 0.0940180103 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_011344_050 0.0945196145 - - PREDICTED: 21 kDa protein [Jatropha curcas]
17 Hb_010217_020 0.0958433691 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
18 Hb_021596_050 0.0970242958 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006351_050 0.1011703583 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
20 Hb_000098_230 0.1026888543 - - Potassium channel AKT2/3, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_160 Hb_001579_160 Hb_009421_060 Hb_009421_060 Hb_001579_160--Hb_009421_060 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_000083_200 Hb_000083_200 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_009421_060--Hb_001500_020 Hb_009421_060--Hb_001541_170 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_004158_040--Hb_001454_350 Hb_010217_020 Hb_010217_020 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_001541_170--Hb_005588_050 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040 Hb_001454_350--Hb_001722_110 Hb_000188_040 Hb_000188_040 Hb_001454_350--Hb_000188_040 Hb_001454_350--Hb_010217_020 Hb_001454_350--Hb_009421_060 Hb_003638_020 Hb_003638_020 Hb_001722_110--Hb_003638_020 Hb_001722_110--Hb_005588_050 Hb_000339_060 Hb_000339_060 Hb_001722_110--Hb_000339_060 Hb_006351_050 Hb_006351_050 Hb_180088_010--Hb_006351_050 Hb_180088_010--Hb_001500_020 Hb_180088_010--Hb_007919_010 Hb_112950_010 Hb_112950_010 Hb_180088_010--Hb_112950_010 Hb_003598_050 Hb_003598_050 Hb_180088_010--Hb_003598_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.14265 1.99519 28.4343 0 0.0654187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.509229 4.83289

CAGE analysis