Hb_001579_190

Information

Type -
Description -
Location Contig1579: 126347-129031
Sequence    

Annotation

kegg
ID rcu:RCOM_0528040
description hypothetical protein
nr
ID XP_002525367.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13825: 126405-129554 , PASA_asmbl_13826: 127448-129530 , PASA_asmbl_13827: 126480-129531 , PASA_asmbl_13828: 128067-129505
cDNA
(Sanger)
(ID:Location)		 034_G20.ab1: 127674-129531 , 035_O24.ab1: 127779-129530 , 045_I12.ab1: 127733-129530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000110_240 0.1032315121 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
3 Hb_008643_220 0.103983459 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
4 Hb_000494_010 0.1222189995 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
5 Hb_005116_130 0.1248345855 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
6 Hb_010407_150 0.1285818978 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
7 Hb_010683_070 0.1365261794 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
8 Hb_000035_150 0.1367982894 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
9 Hb_007643_060 0.1381542707 - - -
10 Hb_046590_010 0.1422951768 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
11 Hb_004218_050 0.1442147515 - - annexin [Manihot esculenta]
12 Hb_002170_060 0.1453763157 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
13 Hb_000260_240 0.1483592063 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
14 Hb_002918_170 0.1489928232 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
15 Hb_003992_130 0.1496124521 - - unnamed protein product [Vitis vinifera]
16 Hb_000500_330 0.1513073342 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
17 Hb_004213_010 0.1513549549 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_001153_160 0.1531877856 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_006615_220 0.1541474126 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
20 Hb_001396_040 0.1542451852 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_190 Hb_001579_190 Hb_000110_240 Hb_000110_240 Hb_001579_190--Hb_000110_240 Hb_008643_220 Hb_008643_220 Hb_001579_190--Hb_008643_220 Hb_000494_010 Hb_000494_010 Hb_001579_190--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_010683_070 Hb_010683_070 Hb_001579_190--Hb_010683_070 Hb_000110_240--Hb_000494_010 Hb_000110_240--Hb_005116_130 Hb_000500_330 Hb_000500_330 Hb_000110_240--Hb_000500_330 Hb_046590_010 Hb_046590_010 Hb_000110_240--Hb_046590_010 Hb_001442_050 Hb_001442_050 Hb_000110_240--Hb_001442_050 Hb_002170_060 Hb_002170_060 Hb_008643_220--Hb_002170_060 Hb_000664_080 Hb_000664_080 Hb_008643_220--Hb_000664_080 Hb_002243_030 Hb_002243_030 Hb_008643_220--Hb_002243_030 Hb_000343_010 Hb_000343_010 Hb_008643_220--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_008643_220--Hb_003992_130 Hb_000494_010--Hb_005116_130 Hb_000494_010--Hb_046590_010 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000494_010--Hb_000500_330 Hb_005116_130--Hb_046590_010 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_005116_130--Hb_001442_050 Hb_001655_080 Hb_001655_080 Hb_005116_130--Hb_001655_080 Hb_001001_010 Hb_001001_010 Hb_010407_150--Hb_001001_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_004567_070 Hb_004567_070 Hb_010407_150--Hb_004567_070 Hb_005695_070 Hb_005695_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_002995_010 Hb_002995_010 Hb_010407_150--Hb_002995_010 Hb_004218_050 Hb_004218_050 Hb_010683_070--Hb_004218_050 Hb_004223_170 Hb_004223_170 Hb_010683_070--Hb_004223_170 Hb_007952_050 Hb_007952_050 Hb_010683_070--Hb_007952_050 Hb_010863_030 Hb_010863_030 Hb_010683_070--Hb_010863_030 Hb_007101_270 Hb_007101_270 Hb_010683_070--Hb_007101_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.477391 6.90093 51.5246 7.14536 0.394634 0.515912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.243843 0.0959201 0 4.80371 11.649

CAGE analysis