Hb_001579_270

Information

Type -
Description -
Location Contig1579: 189678-198343
Sequence    

Annotation

kegg
ID rcu:RCOM_0528000
description phosphatidylinositol 3-kinase class, putative (EC:2.7.1.137)
nr
ID XP_012085400.1
description PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
swissprot
ID P42347
description Phosphatidylinositol 3-kinase, root isoform OS=Glycine max PE=2 SV=1
trembl
ID A0A067JUT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17761 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol 3- root isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13842: 199256-202582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_270 0.0 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
2 Hb_007672_060 0.0680449412 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
3 Hb_000599_300 0.0697359538 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
4 Hb_000054_090 0.0737808796 - - zinc finger protein, putative [Ricinus communis]
5 Hb_054865_120 0.0786342567 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
6 Hb_033594_120 0.0793825435 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
7 Hb_003633_030 0.080420872 - - f-actin capping protein alpha, putative [Ricinus communis]
8 Hb_000272_020 0.0805758954 - - oxidoreductase, putative [Ricinus communis]
9 Hb_001922_170 0.0829063316 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
10 Hb_005847_060 0.0847605731 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
11 Hb_000960_060 0.0847681913 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
12 Hb_008406_190 0.0847725284 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
13 Hb_028227_020 0.0854250929 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
14 Hb_003226_140 0.087413744 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
15 Hb_001157_020 0.0883017212 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
16 Hb_001599_040 0.0884463618 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
17 Hb_007163_070 0.0885527232 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
18 Hb_003688_130 0.0891352287 - - phosphoserine phosphatase, putative [Ricinus communis]
19 Hb_002271_020 0.0899000552 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
20 Hb_000103_080 0.0905518324 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001579_270 Hb_001579_270 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_054865_120 Hb_054865_120 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_007672_060--Hb_000054_090 Hb_007672_060--Hb_000599_300 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_000599_300--Hb_003633_030 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000599_300--Hb_000054_090 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290 Hb_000025_470 Hb_000025_470 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_008748_040 Hb_008748_040 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_033594_120--Hb_003633_030 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_033594_120--Hb_002473_130 Hb_003633_030--Hb_007017_030 Hb_003633_030--Hb_002893_080 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63377 0.697786 1.34697 1.72304 1.68209 2.35384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4768 2.54758 0.928841 1.28254 1.62746

CAGE analysis