Hb_001579_300

Information

Type -
Description -
Location Contig1579: 213915-216983
Sequence    

Annotation

kegg
ID rcu:RCOM_0527870
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012085412.1
description PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
swissprot
ID Q94AJ5
description Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1
trembl
ID B9SH91
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0527870 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase at1g80170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13845: 214905-216038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_300 0.0 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
2 Hb_004730_020 0.0882930043 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
3 Hb_000152_440 0.1089282059 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
4 Hb_005511_130 0.1098793045 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
5 Hb_000388_080 0.1194735845 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_006925_050 0.1204592915 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
7 Hb_000527_080 0.1268954722 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
8 Hb_005496_020 0.1270460781 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
9 Hb_001195_130 0.1271661285 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_210 0.1284777339 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_003680_030 0.1299023974 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
12 Hb_000984_220 0.130415337 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
13 Hb_001847_050 0.1310663151 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
14 Hb_000076_250 0.1334762093 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002097_100 0.135001955 - - protein with unknown function [Ricinus communis]
16 Hb_007304_030 0.1352580481 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
17 Hb_002488_010 0.1354179499 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
18 Hb_000915_130 0.1393891447 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
19 Hb_119583_020 0.1415048554 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
20 Hb_012180_060 0.1432917738 - - peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001579_300 Hb_001579_300 Hb_004730_020 Hb_004730_020 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_006925_050 Hb_006925_050 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080 Hb_004730_020--Hb_005511_130 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_004730_020--Hb_005357_110 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_000086_210 Hb_000086_210 Hb_000152_440--Hb_000086_210 Hb_000012_080 Hb_000012_080 Hb_000152_440--Hb_000012_080 Hb_000935_040 Hb_000935_040 Hb_000152_440--Hb_000935_040 Hb_000139_300 Hb_000139_300 Hb_000152_440--Hb_000139_300 Hb_005074_040 Hb_005074_040 Hb_000152_440--Hb_005074_040 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005511_130--Hb_005357_110 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_006925_050--Hb_005511_130 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_004545_080 Hb_004545_080 Hb_000527_080--Hb_004545_080 Hb_001450_040 Hb_001450_040 Hb_000527_080--Hb_001450_040 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_000527_080--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.752623 0.877968 4.89043 5.62866 0.586928 0.941587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305322 0.589625 0.658907 0.435265 2.84404

CAGE analysis