Hb_001579_310

Information

Type -
Description -
Location Contig1579: 217798-219314
Sequence    

Annotation

kegg
ID pop:POPTR_0008s23140g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012085411.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID A0A067JRT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17765 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13846: 220112-222286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_310 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
2 Hb_007594_090 0.14264647 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
3 Hb_000313_010 0.1446850692 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_003561_030 0.1520573962 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_002843_210 0.1605048252 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
6 Hb_002539_090 0.1614086311 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
7 Hb_012423_050 0.1619544416 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
8 Hb_008841_010 0.1636364745 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
9 Hb_116264_010 0.1650669295 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
10 Hb_000224_120 0.1651919241 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
11 Hb_000012_230 0.1656798412 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
12 Hb_000672_120 0.1697863697 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
13 Hb_000722_040 0.1703724126 - - -
14 Hb_042710_010 0.17112724 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_001935_030 0.171299494 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000414_070 0.1719201803 - - -
17 Hb_000398_160 0.1730538372 - - GDP-mannose transporter, putative [Ricinus communis]
18 Hb_001427_230 0.1770387188 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005588_070 0.1790149414 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
20 Hb_001473_120 0.1807546318 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001579_310 Hb_001579_310 Hb_007594_090 Hb_007594_090 Hb_001579_310--Hb_007594_090 Hb_000313_010 Hb_000313_010 Hb_001579_310--Hb_000313_010 Hb_003561_030 Hb_003561_030 Hb_001579_310--Hb_003561_030 Hb_002843_210 Hb_002843_210 Hb_001579_310--Hb_002843_210 Hb_002539_090 Hb_002539_090 Hb_001579_310--Hb_002539_090 Hb_012423_050 Hb_012423_050 Hb_001579_310--Hb_012423_050 Hb_007594_090--Hb_002539_090 Hb_000672_120 Hb_000672_120 Hb_007594_090--Hb_000672_120 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_004336_050 Hb_004336_050 Hb_007594_090--Hb_004336_050 Hb_000751_130 Hb_000751_130 Hb_007594_090--Hb_000751_130 Hb_007594_090--Hb_003561_030 Hb_001638_240 Hb_001638_240 Hb_000313_010--Hb_001638_240 Hb_001357_080 Hb_001357_080 Hb_000313_010--Hb_001357_080 Hb_000313_010--Hb_002539_090 Hb_000313_010--Hb_000672_120 Hb_000313_010--Hb_007594_090 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_011161_050 Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_003561_030--Hb_000975_110 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_002843_210--Hb_003561_030 Hb_002843_210--Hb_000367_210 Hb_002843_210--Hb_187083_010 Hb_014834_030 Hb_014834_030 Hb_002843_210--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_002843_210--Hb_002025_300 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_001173_040 Hb_001173_040 Hb_002539_090--Hb_001173_040 Hb_002539_090--Hb_001357_080 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115049 0.0272487 0.0418519 0.283058 0.106801 0.556634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.683408 0.635116 0.710896 0.118402 0

CAGE analysis