Hb_001582_020

Information

Type -
Description -
Location Contig1582: 138856-143600
Sequence    

Annotation

kegg
ID rcu:RCOM_0925410
description palmitoyl-acyl carrier protein thioesterase (EC:3.1.2.14)
nr
ID AHI86053.1
description plastid acyl-ACP thioesterase [Vernicia fordii]
swissprot
ID Q9SQI3
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
trembl
ID W6CRX8
description Plastid acyl-ACP thioesterase OS=Vernicia fordii GN=FatB PE=2 SV=1
Gene Ontology
ID GO:0016790
description palmitoyl-acyl carrier protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13937: 138833-143641 , PASA_asmbl_13938: 139096-142922 , PASA_asmbl_13939: 142133-142621 , PASA_asmbl_13940: 141278-141789
cDNA
(Sanger)
(ID:Location)		 035_O04.ab1: 139096-140736

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001582_020 0.0 - - plastid acyl-ACP thioesterase [Vernicia fordii]
2 Hb_002249_020 0.0971342408 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
3 Hb_033152_090 0.0971998589 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
4 Hb_012753_210 0.0998660171 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
5 Hb_000787_080 0.1035729541 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
6 Hb_000258_420 0.10504727 - - sucrose transporter 2A [Hevea brasiliensis]
7 Hb_006846_170 0.1057887293 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
8 Hb_001766_070 0.1092681919 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012286_020 0.1100559896 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
10 Hb_088584_010 0.1133421946 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
11 Hb_000640_190 0.1149404775 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
12 Hb_003177_070 0.1172956341 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
13 Hb_001409_060 0.1184295073 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
14 Hb_003777_130 0.1192843885 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
15 Hb_001009_120 0.1193980278 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
16 Hb_003925_060 0.1197360532 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
17 Hb_000003_680 0.1212081243 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
18 Hb_000042_110 0.1221573234 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
19 Hb_001396_070 0.1241251833 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003449_100 0.1252387819 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001582_020 Hb_001582_020 Hb_002249_020 Hb_002249_020 Hb_001582_020--Hb_002249_020 Hb_033152_090 Hb_033152_090 Hb_001582_020--Hb_033152_090 Hb_012753_210 Hb_012753_210 Hb_001582_020--Hb_012753_210 Hb_000787_080 Hb_000787_080 Hb_001582_020--Hb_000787_080 Hb_000258_420 Hb_000258_420 Hb_001582_020--Hb_000258_420 Hb_006846_170 Hb_006846_170 Hb_001582_020--Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100 Hb_033152_090--Hb_000640_190 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_012753_210--Hb_000787_080 Hb_012753_210--Hb_033152_090 Hb_012753_210--Hb_002249_020 Hb_012753_210--Hb_000815_310 Hb_000045_160 Hb_000045_160 Hb_012753_210--Hb_000045_160 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000003_680 Hb_000003_680 Hb_000787_080--Hb_000003_680 Hb_000787_080--Hb_000258_420 Hb_000787_080--Hb_000815_310 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010 Hb_000258_420--Hb_003777_130 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_000680_120 Hb_000680_120 Hb_000258_420--Hb_000680_120 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_006846_170--Hb_003228_100 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7509 125.28 165.683 116.03 54.6742 37.2879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1156 34.7871 53.2943 17.6771 87.5163

CAGE analysis