Hb_001584_010

Information

Type -
Description -
Location Contig1584: 22932-26781
Sequence    

Annotation

kegg
ID rcu:RCOM_1435340
description kelch repeat protein, putative
nr
ID XP_002512518.1
description kelch repeat protein, putative [Ricinus communis]
swissprot
ID Q5EA50
description Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1
trembl
ID B9RFJ9
description Kelch repeat protein, putative OS=Ricinus communis GN=RCOM_1435340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13948: 23124-24353 , PASA_asmbl_13949: 24526-25466 , PASA_asmbl_13950: 25484-26019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_010 0.0 - - kelch repeat protein, putative [Ricinus communis]
2 Hb_000189_120 0.1143203582 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
3 Hb_008175_030 0.1430757573 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
4 Hb_003299_010 0.1434803189 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_000778_020 0.1530531995 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
6 Hb_000007_160 0.1571412632 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
7 Hb_003525_020 0.1600427322 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000977_010 0.1626429369 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_002662_090 0.16346761 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
10 Hb_010578_050 0.1649515343 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
11 Hb_002783_320 0.171075755 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
12 Hb_001369_160 0.1718796294 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
13 Hb_001195_500 0.1722679918 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_048848_010 0.1762494992 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
15 Hb_004286_030 0.1776660614 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
16 Hb_007618_010 0.178037484 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
17 Hb_007253_040 0.1805409104 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
18 Hb_002739_060 0.181411075 - - -
19 Hb_000532_130 0.1833495482 - - hypothetical protein [Anabaena sp. PCC 7108]
20 Hb_008226_100 0.1887319762 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_001584_010 Hb_001584_010 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_000189_120--Hb_000778_020 Hb_000189_120--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_000189_120--Hb_010253_020 Hb_057079_020 Hb_057079_020 Hb_000189_120--Hb_057079_020 Hb_000189_120--Hb_000007_160 Hb_008175_030--Hb_000778_020 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_008175_030--Hb_057079_020 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130 Hb_005157_010 Hb_005157_010 Hb_003299_010--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_003299_010--Hb_000685_060 Hb_003299_010--Hb_000189_120 Hb_003504_040 Hb_003504_040 Hb_003299_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_000778_020--Hb_010253_020 Hb_000778_020--Hb_001408_150 Hb_001148_040 Hb_001148_040 Hb_000007_160--Hb_001148_040 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_000007_160--Hb_008175_030 Hb_000007_160--Hb_000778_020 Hb_000538_190 Hb_000538_190 Hb_003525_020--Hb_000538_190 Hb_048848_010 Hb_048848_010 Hb_003525_020--Hb_048848_010 Hb_001369_770 Hb_001369_770 Hb_003525_020--Hb_001369_770 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32684 14.3395 2.88112 4.75168 1.37127 1.97158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.421883 0.182576 0.0315248 10.5529 0.632489

CAGE analysis