Hb_001584_070

Information

Type -
Description -
Location Contig1584: 65925-68097
Sequence    

Annotation

kegg
ID rcu:RCOM_1435520
description hypothetical protein
nr
ID XP_002512526.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435520 PE=4 SV=1
Gene Ontology
ID GO:0004177
description xaa-pro aminopeptidase p

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13960: 65939-68041
cDNA
(Sanger)
(ID:Location)		 015_D23.ab1: 65939-68052 , 019_I08.ab1: 65939-68041 , 052_M01.ab1: 65939-68041

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000465_060 0.0569307032 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
3 Hb_000365_380 0.0578002041 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001824_070 0.0585466643 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
5 Hb_012515_010 0.0585891706 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
6 Hb_000417_110 0.0602067822 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
7 Hb_001383_060 0.0619919277 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
8 Hb_000634_050 0.0661499382 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
9 Hb_001818_020 0.0685016681 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
10 Hb_000317_340 0.0688649813 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000545_150 0.0695520179 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
12 Hb_070986_010 0.0701413032 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
13 Hb_000580_080 0.0711574637 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
14 Hb_000970_010 0.0716216248 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
15 Hb_009711_030 0.0717369627 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
16 Hb_000371_080 0.0724337589 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
17 Hb_023732_070 0.072673298 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
18 Hb_005997_010 0.0728146409 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
19 Hb_000120_750 0.0731448997 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
20 Hb_010883_150 0.07429559 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001584_070 Hb_001584_070 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_000317_340 Hb_000317_340 Hb_000365_380--Hb_000317_340 Hb_000365_380--Hb_143629_230 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_032202_090 Hb_032202_090 Hb_000365_380--Hb_032202_090 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_012515_010--Hb_025193_050 Hb_004595_020 Hb_004595_020 Hb_012515_010--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_012515_010--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_012515_010--Hb_024650_050 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001433_050 Hb_001433_050 Hb_001383_060--Hb_001433_050 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.0403 22.0156 19.8946 31.3529 72.5659 98.4024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.043 174.123 70.4078 37.4939 15.5968

CAGE analysis