Hb_001584_080

Information

Type -
Description -
Location Contig1584: 69996-70298
Sequence    

Annotation

kegg
ID rcu:RCOM_1435530
description hypothetical protein
nr
ID KDP23373.1
description hypothetical protein JCGZ_23206 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23206 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13962: 70414-70739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_080 0.0 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
2 Hb_007403_060 0.1129767949 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
3 Hb_033642_110 0.1207808916 - - PREDICTED: MLO-like protein 4 [Jatropha curcas]
4 Hb_005143_040 0.1301071778 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
5 Hb_000500_090 0.1317792858 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
6 Hb_004899_050 0.1326267196 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
7 Hb_002596_040 0.1348686261 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
8 Hb_076693_030 0.1358936618 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
9 Hb_003940_040 0.1371850354 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000207_120 0.1379584139 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
11 Hb_001824_010 0.1444258375 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_000000_460 0.1485525225 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
13 Hb_001047_240 0.1490215801 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
14 Hb_003994_270 0.1495722107 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
15 Hb_002893_080 0.149751279 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
16 Hb_010180_010 0.1507191266 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
17 Hb_003693_070 0.1520812164 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
18 Hb_000103_260 0.1522691067 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
19 Hb_002333_080 0.1528204532 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
20 Hb_005054_290 0.1532764387 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]

Gene co-expression network

sample Hb_001584_080 Hb_001584_080 Hb_007403_060 Hb_007403_060 Hb_001584_080--Hb_007403_060 Hb_033642_110 Hb_033642_110 Hb_001584_080--Hb_033642_110 Hb_005143_040 Hb_005143_040 Hb_001584_080--Hb_005143_040 Hb_000500_090 Hb_000500_090 Hb_001584_080--Hb_000500_090 Hb_004899_050 Hb_004899_050 Hb_001584_080--Hb_004899_050 Hb_002596_040 Hb_002596_040 Hb_001584_080--Hb_002596_040 Hb_008120_010 Hb_008120_010 Hb_007403_060--Hb_008120_010 Hb_011671_040 Hb_011671_040 Hb_007403_060--Hb_011671_040 Hb_003940_040 Hb_003940_040 Hb_007403_060--Hb_003940_040 Hb_000270_490 Hb_000270_490 Hb_007403_060--Hb_000270_490 Hb_000808_280 Hb_000808_280 Hb_007403_060--Hb_000808_280 Hb_000120_060 Hb_000120_060 Hb_007403_060--Hb_000120_060 Hb_003589_090 Hb_003589_090 Hb_033642_110--Hb_003589_090 Hb_002217_310 Hb_002217_310 Hb_033642_110--Hb_002217_310 Hb_001090_040 Hb_001090_040 Hb_033642_110--Hb_001090_040 Hb_021409_020 Hb_021409_020 Hb_033642_110--Hb_021409_020 Hb_000849_070 Hb_000849_070 Hb_033642_110--Hb_000849_070 Hb_018790_030 Hb_018790_030 Hb_033642_110--Hb_018790_030 Hb_000023_280 Hb_000023_280 Hb_005143_040--Hb_000023_280 Hb_001215_040 Hb_001215_040 Hb_005143_040--Hb_001215_040 Hb_005914_080 Hb_005914_080 Hb_005143_040--Hb_005914_080 Hb_002391_270 Hb_002391_270 Hb_005143_040--Hb_002391_270 Hb_005054_290 Hb_005054_290 Hb_005143_040--Hb_005054_290 Hb_076693_030 Hb_076693_030 Hb_005143_040--Hb_076693_030 Hb_001329_220 Hb_001329_220 Hb_000500_090--Hb_001329_220 Hb_002333_080 Hb_002333_080 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_007254_040 Hb_007254_040 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_004970_110 Hb_004970_110 Hb_000500_090--Hb_004970_110 Hb_007002_030 Hb_007002_030 Hb_004899_050--Hb_007002_030 Hb_000053_100 Hb_000053_100 Hb_004899_050--Hb_000053_100 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120 Hb_002296_040 Hb_002296_040 Hb_002596_040--Hb_002296_040 Hb_002596_040--Hb_076693_030 Hb_008695_040 Hb_008695_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002662_030 Hb_002662_030 Hb_002596_040--Hb_002662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1567 6.70267 5.33163 35.6863 17.6893 27.0524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4429 23.2872 13.5614 26.9164 4.91109

CAGE analysis