Hb_001584_120

Information

Type -
Description -
Location Contig1584: 88095-95194
Sequence    

Annotation

kegg
ID tcc:TCM_026788
description Metallopeptidase M24 family protein isoform 1
nr
ID XP_012088866.1
description PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
swissprot
ID Q9NQH7
description Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1
trembl
ID A0A067JUZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23202 PE=4 SV=1
Gene Ontology
ID GO:0004177
description probable xaa-pro aminopeptidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13964: 88116-89265 , PASA_asmbl_13965: 89905-94932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_120 0.0 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
2 Hb_001500_140 0.0540516956 - - pelota, putative [Ricinus communis]
3 Hb_001635_090 0.0642573227 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
4 Hb_000603_150 0.0666706895 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
5 Hb_001252_120 0.0666862333 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
6 Hb_000083_120 0.0699911334 - - transcription factor, putative [Ricinus communis]
7 Hb_028227_070 0.0715782674 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
8 Hb_008725_230 0.0722575153 - - PREDICTED: CTP synthase [Jatropha curcas]
9 Hb_003750_050 0.0729077446 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
10 Hb_165928_030 0.072998729 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004324_130 0.0746521367 - - polypyrimidine tract binding protein, putative [Ricinus communis]
12 Hb_001016_120 0.074680697 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
13 Hb_093458_040 0.0753857064 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_000028_180 0.0763125389 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
15 Hb_000156_010 0.0765090392 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
16 Hb_105328_020 0.0771617464 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_001408_040 0.0785154026 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_155159_020 0.0789972163 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
19 Hb_000556_120 0.0796665389 - - Spastin, putative [Ricinus communis]
20 Hb_172632_120 0.0797062431 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001584_120 Hb_001584_120 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000028_180 Hb_000028_180 Hb_001252_120--Hb_000028_180 Hb_008725_230 Hb_008725_230 Hb_001252_120--Hb_008725_230 Hb_000556_120 Hb_000556_120 Hb_001252_120--Hb_000556_120 Hb_004324_130 Hb_004324_130 Hb_001252_120--Hb_004324_130 Hb_022115_020 Hb_022115_020 Hb_001252_120--Hb_022115_020 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_000083_120--Hb_004324_130 Hb_000083_120--Hb_001500_140 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_000504_070 Hb_000504_070 Hb_028227_070--Hb_000504_070 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00609 3.55869 3.38749 5.49236 2.7015 5.05122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95539 4.4353 4.23562 5.57779 2.63527

CAGE analysis