Hb_001584_150

Information

Type -
Description -
Location Contig1584: 102729-105083
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01450g
description hypothetical protein
nr
ID XP_012088863.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
swissprot
ID Q9LN01
description Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
trembl
ID U5GCY0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s01450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13970: 104535-104871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_150 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
2 Hb_008500_010 0.0589513179 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
3 Hb_007757_110 0.0606687769 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_000204_210 0.0660288631 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
5 Hb_000062_250 0.0693067108 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
6 Hb_001507_020 0.07480942 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
7 Hb_002311_040 0.0756707425 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
8 Hb_015807_070 0.0767437286 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
9 Hb_006316_040 0.0771245827 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
10 Hb_010172_090 0.0797949904 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001975_160 0.0814354501 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001956_200 0.0826126769 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
13 Hb_012656_030 0.0831739382 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
14 Hb_001930_010 0.0855791717 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
15 Hb_004545_140 0.0876022012 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
16 Hb_000000_370 0.0877120139 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
17 Hb_009486_200 0.0904166897 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
18 Hb_001213_050 0.0904648281 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
19 Hb_124315_020 0.0908158186 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000229_020 0.0913608849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_150 Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_001584_150--Hb_008500_010 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_008500_010--Hb_002311_040 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_000204_210--Hb_008500_010 Hb_002678_020 Hb_002678_020 Hb_000204_210--Hb_002678_020 Hb_000204_210--Hb_001507_020 Hb_001141_390 Hb_001141_390 Hb_000204_210--Hb_001141_390 Hb_009486_200 Hb_009486_200 Hb_000204_210--Hb_009486_200 Hb_000077_230 Hb_000077_230 Hb_000062_250--Hb_000077_230 Hb_000062_250--Hb_015807_070 Hb_000000_370 Hb_000000_370 Hb_000062_250--Hb_000000_370 Hb_000062_250--Hb_007757_110 Hb_000077_070 Hb_000077_070 Hb_000062_250--Hb_000077_070 Hb_001975_160 Hb_001975_160 Hb_001507_020--Hb_001975_160 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_001507_020--Hb_007757_110 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_002311_040--Hb_004684_010 Hb_002311_040--Hb_009486_200 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62629 1.66455 0.399313 0.71235 1.45574 1.80956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.848503 1.05343 2.25988 1.00796 0.881818

CAGE analysis