Hb_001584_160

Information

Type -
Description -
Location Contig1584: 107379-109383
Sequence    

Annotation

kegg
ID pmum:103344559
description putative pentatricopeptide repeat-containing protein At1g56570
nr
ID XP_012088861.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
swissprot
ID Q9FXA9
description Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
trembl
ID F6I4U5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00870 PE=4 SV=1
Gene Ontology
ID GO:0006950
description pentatricopeptide repeat-containing protein at1g56570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13974: 108428-109049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_160 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
2 Hb_000386_030 0.0780341527 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
3 Hb_031042_020 0.0810199738 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
4 Hb_003750_080 0.0844248353 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
5 Hb_002986_130 0.0847459464 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
6 Hb_010175_020 0.0848011663 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000413_180 0.087682785 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_000152_820 0.08991713 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
9 Hb_010710_010 0.0912065084 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_000953_010 0.0945820145 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
11 Hb_002026_100 0.0946355788 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_000776_110 0.0962392975 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
13 Hb_007757_110 0.0965415391 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_001516_100 0.0993626804 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_025557_010 0.099504656 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
16 Hb_002810_020 0.1029262123 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
17 Hb_000406_220 0.1048516054 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
18 Hb_000500_040 0.1050366333 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004734_060 0.1059200968 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
20 Hb_000976_150 0.1066548097 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_160 Hb_001584_160 Hb_000386_030 Hb_000386_030 Hb_001584_160--Hb_000386_030 Hb_031042_020 Hb_031042_020 Hb_001584_160--Hb_031042_020 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_002986_130 Hb_002986_130 Hb_001584_160--Hb_002986_130 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_000413_180 Hb_000413_180 Hb_001584_160--Hb_000413_180 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_001437_180 Hb_001437_180 Hb_000386_030--Hb_001437_180 Hb_010710_010 Hb_010710_010 Hb_000386_030--Hb_010710_010 Hb_000803_190 Hb_000803_190 Hb_000386_030--Hb_000803_190 Hb_000386_030--Hb_000413_180 Hb_031042_020--Hb_002986_130 Hb_001266_060 Hb_001266_060 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_000390_070 Hb_000390_070 Hb_002986_130--Hb_000390_070 Hb_002986_130--Hb_000386_030 Hb_007757_110 Hb_007757_110 Hb_002986_130--Hb_007757_110 Hb_002986_130--Hb_001266_060 Hb_000152_820 Hb_000152_820 Hb_010175_020--Hb_000152_820 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_010175_020--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_010175_020--Hb_000413_180 Hb_000413_180--Hb_010710_010 Hb_000413_180--Hb_000230_080 Hb_000413_180--Hb_000152_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77195 2.98579 0.259488 0.580274 3.05855 3.69147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08851 2.49262 4.05761 1.88115 0.896531

CAGE analysis