Hb_001584_170

Information

Type -
Description -
Location Contig1584: 111940-116126
Sequence    

Annotation

kegg
ID rcu:RCOM_1435720
description beta-fructofuranosidase, putative
nr
ID AHA82519.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q9FXA8
description Alkaline/neutral invertase A, mitochondrial OS=Arabidopsis thaliana GN=INVA PE=1 SV=1
trembl
ID V5N4X0
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV10 PE=2 SV=1
Gene Ontology
ID GO:0005739
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13975: 111778-115138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_170 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_003878_140 0.0715888662 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
3 Hb_000865_080 0.0770098079 - - arsenite-resistance protein, putative [Ricinus communis]
4 Hb_004734_060 0.0809360837 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
5 Hb_000224_060 0.0809536886 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
6 Hb_012395_160 0.0817888597 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
7 Hb_002977_010 0.0853096829 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
8 Hb_033152_080 0.08983328 - - RNA-binding protein Nova-1, putative [Ricinus communis]
9 Hb_004970_150 0.0899979876 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
10 Hb_006316_070 0.0901109275 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_001157_180 0.0915315192 - - protein binding protein, putative [Ricinus communis]
12 Hb_002813_010 0.0929617443 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
13 Hb_001141_330 0.0930813972 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
14 Hb_001829_010 0.0938041351 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_000327_310 0.094585297 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
16 Hb_000291_190 0.0949845511 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
17 Hb_005399_020 0.0972658961 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
18 Hb_023827_040 0.0974369004 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
19 Hb_000808_180 0.0977609754 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
20 Hb_004724_360 0.1004369357 - - OTU-like cysteine protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001584_170 Hb_001584_170 Hb_003878_140 Hb_003878_140 Hb_001584_170--Hb_003878_140 Hb_000865_080 Hb_000865_080 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_000224_060 Hb_000224_060 Hb_001584_170--Hb_000224_060 Hb_012395_160 Hb_012395_160 Hb_001584_170--Hb_012395_160 Hb_002977_010 Hb_002977_010 Hb_001584_170--Hb_002977_010 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_033152_080 Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_000224_060--Hb_000291_190 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050 Hb_005399_020 Hb_005399_020 Hb_012395_160--Hb_005399_020 Hb_148209_020 Hb_148209_020 Hb_012395_160--Hb_148209_020 Hb_005038_020 Hb_005038_020 Hb_012395_160--Hb_005038_020 Hb_006316_070 Hb_006316_070 Hb_012395_160--Hb_006316_070 Hb_000116_280 Hb_000116_280 Hb_012395_160--Hb_000116_280 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_002977_010--Hb_006316_070 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_002977_010--Hb_148209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.4302 64.506 13.6869 9.53699 65.1673 86.6512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1132 31.8775 36.0645 25.4768 10.4351

CAGE analysis